Literature DB >> 12188666

The active site of cellobiohydrolase Cel6A from Trichoderma reesei: the roles of aspartic acids D221 and D175.

Anu Koivula1, Laura Ruohonen, Gerd Wohlfahrt, Tapani Reinikainen, Tuula T Teeri, Kathleen Piens, Marc Claeyssens, Martin Weber, Andrea Vasella, Dieter Becker, Michael L Sinnott, Jin-Yu Zou, Gerard J Kleywegt, Michael Szardenings, Jerry Ståhlberg, T Alwyn Jones.   

Abstract

Trichoderma reesei cellobiohydrolase Cel6A is an inverting glycosidase. Structural studies have established that the tunnel-shaped active site of Cel6A contains two aspartic acids, D221 and D175, that are close to the glycosidic oxygen of the scissile bond and at hydrogen-bonding distance from each other. Here, site-directed mutagenesis, X-ray crystallography, and enzyme kinetic studies have been used to confirm the role of residue D221 as the catalytic acid. D175 is shown to affect protonation of D221 and to contribute to the electrostatic stabilization of the partial positive charge in the transition state. Structural and modeling studies suggest that the single-displacement mechanism of Cel6A may not directly involve a catalytic base. The value of (D2O)(V) of 1.16 +/- 0.14 for hydrolysis of cellotriose suggests that the large direct effect expected for proton transfer from the nucleophilic water through a water chain (Grotthus mechanism) is offset by an inverse effect arising from reversibly breaking the short, tight hydrogen bond between D221 and D175 before catalysis.

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Year:  2002        PMID: 12188666     DOI: 10.1021/ja012659q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

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Authors:  Nikolaos Georgelis; Akira Tabuchi; Nikolas Nikolaidis; Daniel J Cosgrove
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3.  Active site and laminarin binding in glycoside hydrolase family 55.

Authors:  Christopher M Bianchetti; Taichi E Takasuka; Sam Deutsch; Hannah S Udell; Eric J Yik; Lai F Bergeman; Brian G Fox
Journal:  J Biol Chem       Date:  2015-03-09       Impact factor: 5.157

4.  Identification, characterization, and structural analyses of a fungal endo-β-1,2-glucanase reveal a new glycoside hydrolase family.

Authors:  Nobukiyo Tanaka; Masahiro Nakajima; Megumi Narukawa-Nara; Hiroki Matsunaga; Shinji Kamisuki; Hiroki Aramasa; Yuta Takahashi; Naohisa Sugimoto; Koichi Abe; Tohru Terada; Akimasa Miyanaga; Tetsuro Yamashita; Fumio Sugawara; Takashi Kamakura; Shiro Komba; Hiroyuki Nakai; Hayao Taguchi
Journal:  J Biol Chem       Date:  2019-03-29       Impact factor: 5.157

5.  Glycobiology: The case of the missing base.

Authors:  Stephen G Withers; Gideon J Davies
Journal:  Nat Chem Biol       Date:  2012-10-28       Impact factor: 15.040

6.  Heterologous expression of cellobiohydrolase II (Cel6A) in maize endosperm.

Authors:  Shivakumar Pattada Devaiah; Deborah Vicuna Requesens; Yeun-Kyung Chang; Kendall R Hood; Ashley Flory; John A Howard; Elizabeth E Hood
Journal:  Transgenic Res       Date:  2012-10-19       Impact factor: 2.788

7.  Computational investigation of the pH dependence of loop flexibility and catalytic function in glycoside hydrolases.

Authors:  Lintao Bu; Michael F Crowley; Michael E Himmel; Gregg T Beckham
Journal:  J Biol Chem       Date:  2013-03-15       Impact factor: 5.157

8.  Biochemical and structural analyses of a bacterial endo-β-1,2-glucanase reveal a new glycoside hydrolase family.

Authors:  Koichi Abe; Masahiro Nakajima; Tetsuro Yamashita; Hiroki Matsunaga; Shinji Kamisuki; Takanori Nihira; Yuta Takahashi; Naohisa Sugimoto; Akimasa Miyanaga; Hiroyuki Nakai; Takatoshi Arakawa; Shinya Fushinobu; Hayao Taguchi
Journal:  J Biol Chem       Date:  2017-03-07       Impact factor: 5.157

9.  Ultrastructure and composition of the Nannochloropsis gaditana cell wall.

Authors:  Matthew J Scholz; Taylor L Weiss; Robert E Jinkerson; Jia Jing; Robyn Roth; Ursula Goodenough; Matthew C Posewitz; Henri G Gerken
Journal:  Eukaryot Cell       Date:  2014-09-19

10.  Single-molecule Imaging Analysis of Binding, Processive Movement, and Dissociation of Cellobiohydrolase Trichoderma reesei Cel6A and Its Domains on Crystalline Cellulose.

Authors:  Akihiko Nakamura; Tomoyuki Tasaki; Daiki Ishiwata; Mayuko Yamamoto; Yasuko Okuni; Akasit Visootsat; Morice Maximilien; Hiroyuki Noji; Taku Uchiyama; Masahiro Samejima; Kiyohiko Igarashi; Ryota Iino
Journal:  J Biol Chem       Date:  2016-09-08       Impact factor: 5.157

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