Literature DB >> 12188652

Physical interpretation of residual dipolar couplings in neutral aligned media.

Andrew Almond1, Jacob B Axelsen.   

Abstract

A novel method is described for rapidly calculating alignment tensors from hydrodynamic shape, required for the prediction of residual dipolar couplings in neutral aligned media. Simulations of alignment were used to show that for steric restriction at a planar surface, the alignment process is dependent on linear hydrodynamic length. However, as discussed, previous methods are not in agreement with this observation. Therefore, the method presented here is the first to provide simple, accurate predictions of the alignment tensor for neutral and dilute media, while being consistent with simulations of alignment. It provides predictions in a fraction of the time of a simulation approach, while aiding physical intuition by providing a direct link between shape and alignment. Not only is this physically gratifying, but it also permits residual dipolar couplings to be applied in demanding situations where simulations of alignment are not desirable, such as in studies of molecular dynamics.

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Year:  2002        PMID: 12188652     DOI: 10.1021/ja026876i

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  28 in total

Review 1.  Weak alignment offers new NMR opportunities to study protein structure and dynamics.

Authors:  Ad Bax
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

2.  Structure and disorder in the ribonuclease S-peptide probed by NMR residual dipolar couplings.

Authors:  Andrei T Alexandrescu; Richard A Kammerer
Journal:  Protein Sci       Date:  2003-10       Impact factor: 6.725

3.  Prediction of charge-induced molecular alignment of biomolecules dissolved in dilute liquid-crystalline phases.

Authors:  Markus Zweckstetter; Gerhard Hummer; Ad Bax
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

4.  A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering.

Authors:  Pau Bernadó; Laurence Blanchard; Peter Timmins; Dominique Marion; Rob W H Ruigrok; Martin Blackledge
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-11       Impact factor: 11.205

5.  Prediction of molecular alignment of nucleic acids in aligned media.

Authors:  Bin Wu; Michael Petersen; Frederic Girard; Marco Tessari; Sybren S Wijmenga
Journal:  J Biomol NMR       Date:  2006-05-23       Impact factor: 2.835

6.  A unifying probabilistic framework for analyzing residual dipolar couplings.

Authors:  Michael Habeck; Michael Nilges; Wolfgang Rieping
Journal:  J Biomol NMR       Date:  2007-12-20       Impact factor: 2.835

7.  Theoretical framework for NMR residual dipolar couplings in unfolded proteins.

Authors:  O I Obolensky; Kai Schlepckow; Harald Schwalbe; A V Solov'yov
Journal:  J Biomol NMR       Date:  2007-07-07       Impact factor: 2.835

Review 8.  Equivalence between Euler angle conventions for the description of tensorial interactions in liquid NMR: application to different software programs.

Authors:  Patrice Dosset; Philippe Barthe; Martin Cohen-Gonsaud; Christian Roumestand; Hélène Déméné
Journal:  J Biomol NMR       Date:  2013-10-17       Impact factor: 2.835

9.  A tool for the prediction of structures of complex sugars.

Authors:  Junchao Xia; Claudio Margulis
Journal:  J Biomol NMR       Date:  2008-10-25       Impact factor: 2.835

10.  Residual dipolar coupling investigation of a heparin tetrasaccharide confirms the limited effect of flexibility of the iduronic acid on the molecular shape of heparin.

Authors:  Lan Jin; Milos Hricovíni; Jon A Deakin; Malcolm Lyon; Dusan Uhrín
Journal:  Glycobiology       Date:  2009-07-31       Impact factor: 4.313

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