Literature DB >> 24132779

Equivalence between Euler angle conventions for the description of tensorial interactions in liquid NMR: application to different software programs.

Patrice Dosset1, Philippe Barthe, Martin Cohen-Gonsaud, Christian Roumestand, Hélène Déméné.   

Abstract

Long-range orientational restraints derived from alignment or rotational diffusion tensors have greatly contributed to the expansion of applications in biomolecular NMR. The orientation of the principal axis system of these tensors is usually described by the so-called Euler angles. However, no clear consensus has emerged concerning the convention of the associated orthogonal rotations. As a result, the different programs that derive or predict them have adopted different conventions, which make comparison between their results difficult. Moreover, the rotation schemes are seldom completely described. Here, we summarize the different conventions, determine which ones are adopted by commonly used software packages, and establish the formal equivalencies between the different calculated Euler angles.

Mesh:

Year:  2013        PMID: 24132779     DOI: 10.1007/s10858-013-9790-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  32 in total

1.  An analytical solution to the problem of the orientation of rigid particles by planar obstacles. Application to membrane systems and to the calculation of dipolar couplings in protein NMR spectroscopy.

Authors:  M X Fernandes; P Bernadó; M Pons; J García de la Torre
Journal:  J Am Chem Soc       Date:  2001-12-05       Impact factor: 15.419

2.  Structure refinement of flexible proteins using dipolar couplings: application to the protein p8MTCP1.

Authors:  Hélène Déméné; Thierry Ducat; Philippe Barthe; Marc-André Delsuc; Christian Roumestand
Journal:  J Biomol NMR       Date:  2002-01       Impact factor: 2.835

3.  Determination of the rotational diffusion tensor of macromolecules in solution from nmr relaxation data with a combination of exact and approximate methods--application to the determination of interdomain orientation in multidomain proteins.

Authors:  R Ghose; D Fushman; D Cowburn
Journal:  J Magn Reson       Date:  2001-04       Impact factor: 2.229

4.  The Xplor-NIH NMR molecular structure determination package.

Authors:  Charles D Schwieters; John J Kuszewski; Nico Tjandra; G Marius Clore
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

5.  Prediction of charge-induced molecular alignment of biomolecules dissolved in dilute liquid-crystalline phases.

Authors:  Markus Zweckstetter; Gerhard Hummer; Ad Bax
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

6.  Characterization of the overall rotational diffusion of a protein from 15N relaxation measurements and hydrodynamic calculations.

Authors:  Jennifer Blake-Hall; Oliver Walker; David Fushman
Journal:  Methods Mol Biol       Date:  2004

7.  Defining long range order in NMR structure determination from the dependence of heteronuclear relaxation times on rotational diffusion anisotropy.

Authors:  N Tjandra; D S Garrett; A M Gronenborn; A Bax; G M Clore
Journal:  Nat Struct Biol       Date:  1997-06

8.  From genetic to structural characterization of a new class of RNA-binding domain within the SacY/BglG family of antiterminator proteins.

Authors:  X Manival; Y Yang; M P Strub; M Kochoyan; M Steinmetz; S Aymerich
Journal:  EMBO J       Date:  1997-08-15       Impact factor: 11.598

9.  The closed and compact domain organization of the 70-kDa human cytochrome P450 reductase in its oxidized state as revealed by NMR.

Authors:  Bruno Vincent; Nelly Morellet; Fataneh Fatemi; Louise Aigrain; Gilles Truan; Eric Guittet; Ewen Lescop
Journal:  J Mol Biol       Date:  2012-04-26       Impact factor: 5.469

10.  Using the experimentally determined components of the overall rotational diffusion tensor to restrain molecular shape and size in NMR structure determination of globular proteins and protein-protein complexes.

Authors:  Yaroslav Ryabov; Jeong-Yong Suh; Alexander Grishaev; G Marius Clore; Charles D Schwieters
Journal:  J Am Chem Soc       Date:  2009-07-15       Impact factor: 15.419

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  1 in total

1.  FANTEN: a new web-based interface for the analysis of magnetic anisotropy-induced NMR data.

Authors:  Mauro Rinaldelli; Azzurra Carlon; Enrico Ravera; Giacomo Parigi; Claudio Luchinat
Journal:  J Biomol NMR       Date:  2014-11-22       Impact factor: 2.835

  1 in total

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