Literature DB >> 12188643

New natural product families from an environmental DNA (eDNA) gene cluster.

Sean F Brady1, Carol J Chao, Jon Clardy.   

Abstract

Uncultured bacteria represent a potentially rich source of new and useful natural products. Studying these natural products requires the development of effective yet straightforward methods to access the small-molecule chemical diversity produced by uncultured bacteria. In this study, DNA extracted directly from soil samples (environmental DNA, eDNA) was used to construct cosmid libraries in Escherichia coli, and these clones were then assayed for the production of antibiosis. A 13 open reading frame (ORF) biosynthetic gene cluster (feeA-M) found in one of the antibacterial active clones, CSLC-2, confers to E. coli the production of two new families of natural products that are derived from long chain N-acyltyrosines. The fee gene cluster and three families of the long chain acyl phenols derived from tyrosine (families 1, 2, and 3) are described.

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Year:  2002        PMID: 12188643     DOI: 10.1021/ja0268985

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  37 in total

Review 1.  Culture-independent discovery of natural products from soil metagenomes.

Authors:  Micah Katz; Bradley M Hover; Sean F Brady
Journal:  J Ind Microbiol Biotechnol       Date:  2015-11-19       Impact factor: 3.346

Review 2.  Metagenomics: application of genomics to uncultured microorganisms.

Authors:  Jo Handelsman
Journal:  Microbiol Mol Biol Rev       Date:  2004-12       Impact factor: 11.056

3.  Characterization of a forest soil metagenome clone that confers indirubin and indigo production on Escherichia coli.

Authors:  He Kyoung Lim; Eu Jin Chung; Jin-Cheol Kim; Gyung Ja Choi; Kyoung Soo Jang; Young Ryun Chung; Kwang Yun Cho; Seon-Woo Lee
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

Review 4.  Natural products from plant-associated microorganisms: distribution, structural diversity, bioactivity, and implications of their occurrence.

Authors:  A A Leslie Gunatilaka
Journal:  J Nat Prod       Date:  2006-03       Impact factor: 4.050

5.  Two tyrosine residues, Tyr-108 and Tyr-503, are responsible for the deprotonation of phenolic substrates in vanillyl-alcohol oxidase.

Authors:  Tom A Ewing; Quoc-Thai Nguyen; Robert C Allan; Gudrun Gygli; Elvira Romero; Claudia Binda; Marco W Fraaije; Andrea Mattevi; Willem J H van Berkel
Journal:  J Biol Chem       Date:  2017-07-17       Impact factor: 5.157

Review 6.  Metagenomic approaches to natural products from free-living and symbiotic organisms.

Authors:  Sean F Brady; Luke Simmons; Jeffrey H Kim; Eric W Schmidt
Journal:  Nat Prod Rep       Date:  2009-09-16       Impact factor: 13.423

7.  Synthetic libraries of tyrosine-derived bacterial metabolites.

Authors:  Savvas N Georgiades; Jon Clardy
Journal:  Bioorg Med Chem Lett       Date:  2007-10-22       Impact factor: 2.823

8.  Natural products from environmental DNA hosted in Ralstonia metallidurans.

Authors:  Jeffrey W Craig; Fang-Yuan Chang; Sean F Brady
Journal:  ACS Chem Biol       Date:  2009-01-16       Impact factor: 5.100

9.  Characterization of a novel type of oxidative decarboxylase involved in the biosynthesis of the styryl moiety of chondrochloren from an acylated tyrosine.

Authors:  Shwan Rachid; Ole Revermann; Christina Dauth; Uli Kazmaier; Rolf Müller
Journal:  J Biol Chem       Date:  2010-01-15       Impact factor: 5.157

10.  Functional metagenomic discovery of bacterial effectors in the human microbiome and isolation of commendamide, a GPCR G2A/132 agonist.

Authors:  Louis J Cohen; Hahk-Soo Kang; John Chu; Yun-Han Huang; Emma A Gordon; Boojala Vijay B Reddy; Melinda A Ternei; Jeffrey W Craig; Sean F Brady
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

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