Literature DB >> 12187379

Aerobiosis increases the genomic guanine plus cytosine content (GC%) in prokaryotes.

Hugo Naya1, Héctor Romero, Alejandro Zavala, Beatriz Alvarez, Héctor Musto.   

Abstract

The huge variation in the genomic guanine plus cytosine content (GC%) among prokaryotes has been explained by two mutually exclusive hypotheses, namely, selectionist and neutralist. The former proposals have in common the assumption that this feature is a form of adaptation to some ecological or physiological condition. On the other hand, the neutralist interpretation states that the variations are due only to different mutational biases. Since all of the traits that have been proposed by the selectionists either appeared to be limited to certain genera or were invalidated by the availability of more data, they cannot be considered as a selective force influencing the genomic GC% across all prokaryotes. In this report we show that aerobic prokaryotes display a significant increment in genomic GC% in relation to anaerobic ones. This is the first time that a link between a metabolic character and GC% has been found, independently of phylogenetic relationships and with a statistically significant amount of data.

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Year:  2002        PMID: 12187379     DOI: 10.1007/s00239-002-2323-3

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  63 in total

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2.  Codon usage between genomes is constrained by genome-wide mutational processes.

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Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-27       Impact factor: 11.205

3.  Amino acid compositional shifts during streptophyte transitions to terrestrial habitats.

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Journal:  J Mol Evol       Date:  2010-12-14       Impact factor: 2.395

4.  Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae.

Authors:  Haruo Suzuki; Tristan Lefébure; Paulina Pavinski Bitar; Michael J Stanhope
Journal:  BMC Genomics       Date:  2012-01-24       Impact factor: 3.969

5.  Environments shape the nucleotide composition of genomes.

Authors:  Konrad U Foerstner; Christian von Mering; Sean D Hooper; Peer Bork
Journal:  EMBO Rep       Date:  2005-12       Impact factor: 8.807

6.  Variation among species in proteomic sulphur content is related to environmental conditions.

Authors:  Jason G Bragg; Dominique Thomas; Peggy Baudouin-Cornu
Journal:  Proc Biol Sci       Date:  2006-05-22       Impact factor: 5.349

7.  Similar compositional biases are caused by very different mutational effects.

Authors:  Eduardo P C Rocha; Marie Touchon; Edward J Feil
Journal:  Genome Res       Date:  2006-10-26       Impact factor: 9.043

8.  Mutations stabilize small subunit ribosomal RNA in desiccation-tolerant cyanobacteria nostoc.

Authors:  D Han; Z Hu
Journal:  Curr Microbiol       Date:  2007-03-02       Impact factor: 2.188

Review 9.  Comparative analysis of environmental sequences: potential and challenges.

Authors:  Konrad U Foerstner; Christian von Mering; Peer Bork
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-03-29       Impact factor: 6.237

10.  Different clustering of genomes across life using the A-T-C-G and degenerate R-Y alphabets: early and late signaling on genome evolution?

Authors:  V Kirzhner; A Paz; Z Volkovich; E Nevo; A Korol
Journal:  J Mol Evol       Date:  2007-03-19       Impact factor: 2.395

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