Literature DB >> 12173971

RNA as a target for drug design, the example of Tat-TAR interaction.

M Froeyen1, P Herdewijn.   

Abstract

One of the new targets in the battle against HIV-1 infection is the interaction between the viral transactivator and the transactivation response (TAR) element, which is necessary for HIV-1 replication. After an overview of the most recent structural studies of the Tat-TAR system, new TAR-targeted inhibitors are presented in several classes: antisense oligonucleotides, cationic peptides, intercalators and a large class of small RNA binding molecules. The method of library screening of RNA binding ligands in the search for new inhibitors is explained in detail. Inhibition of Tat-TAR interaction is considered as a realistic approach to develop new anti-HIV compounds. The RNA binding molecules in this review also demonstrate that the development of drugs that target RNA will become a feasible goal and that such compounds will be added in the future to the therapeutic arsenal to combat several diseases.

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Year:  2002        PMID: 12173971     DOI: 10.2174/1568026023393200

Source DB:  PubMed          Journal:  Curr Top Med Chem        ISSN: 1568-0266            Impact factor:   3.295


  9 in total

1.  Using pyrene-labeled HIV-1 TAR to measure RNA-small molecule binding.

Authors:  Kenneth F Blount; Yitzhak Tor
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

2.  LNA/DNA chimeric oligomers mimic RNA aptamers targeted to the TAR RNA element of HIV-1.

Authors:  Fabien Darfeuille; Jens Bo Hansen; Henrik Orum; Carmelo Di Primo; Jean-Jacques Toulmé
Journal:  Nucleic Acids Res       Date:  2004-06-04       Impact factor: 16.971

3.  Evidence that electrostatic interactions dictate the ligand-induced arrest of RNA global flexibility.

Authors:  Stephen W Pitt; Qi Zhang; Dinshaw J Patel; Hashim M Al-Hashimi
Journal:  Angew Chem Int Ed Engl       Date:  2005-05-30       Impact factor: 15.336

4.  Probing Na(+)-induced changes in the HIV-1 TAR conformational dynamics using NMR residual dipolar couplings: new insights into the role of counterions and electrostatic interactions in adaptive recognition.

Authors:  Anette Casiano-Negroni; Xiaoyan Sun; Hashim M Al-Hashimi
Journal:  Biochemistry       Date:  2007-05-09       Impact factor: 3.162

5.  Binding sites of the viral RNA element TAR and of TAR mutants for various peptide ligands, probed with LILBID: a new laser mass spectrometry.

Authors:  Nina Morgner; Hans-Dieter Barth; Bernhard Brutschy; Ute Scheffer; Sven Breitung; Michael Göbel
Journal:  J Am Soc Mass Spectrom       Date:  2008-07-03       Impact factor: 3.109

6.  Argininamide binding arrests global motions in HIV-1 TAR RNA: comparison with Mg2+-induced conformational stabilization.

Authors:  Stephen W Pitt; Ananya Majumdar; Alexander Serganov; Dinshaw J Patel; Hashim M Al-Hashimi
Journal:  J Mol Biol       Date:  2004-04-16       Impact factor: 5.469

7.  New, extended hairpin form of the TAR-2 RNA domain points to the structural polymorphism at the 5' end of the HIV-2 leader RNA.

Authors:  Katarzyna Pachulska-Wieczorek; Katarzyna J Purzycka; Ryszard W Adamiak
Journal:  Nucleic Acids Res       Date:  2006-05-31       Impact factor: 16.971

8.  Bis-3-Chloropiperidines Targeting TAR RNA as A Novel Strategy to Impair the HIV-1 Nucleocapsid Protein.

Authors:  Alice Sosic; Giulia Olivato; Caterina Carraro; Richard Göttlich; Dan Fabris; Barbara Gatto
Journal:  Molecules       Date:  2021-03-26       Impact factor: 4.411

Review 9.  Targeting RNA structures with small molecules.

Authors:  Jessica L Childs-Disney; Xueyi Yang; Quentin M R Gibaut; Yuquan Tong; Robert T Batey; Matthew D Disney
Journal:  Nat Rev Drug Discov       Date:  2022-08-08       Impact factor: 112.288

  9 in total

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