Literature DB >> 12171655

Molecular basis of cold adaptation.

Salvino D'Amico1, Paule Claverie, Tony Collins, Daphné Georlette, Emmanuelle Gratia, Anne Hoyoux, Marie-Alice Meuwis, Georges Feller, Charles Gerday.   

Abstract

Cold-adapted, or psychrophilic, organisms are able to thrive at low temperatures in permanently cold environments, which in fact characterize the greatest proportion of our planet. Psychrophiles include both prokaryotic and eukaryotic organisms and thus represent a significant proportion of the living world. These organisms produce cold-evolved enzymes that are partially able to cope with the reduction in chemical reaction rates induced by low temperatures. As a rule, cold-active enzymes display a high catalytic efficiency, associated however, with a low thermal stability. In most cases, the adaptation to cold is achieved through a reduction in the activation energy that possibly originates from an increased flexibility of either a selected area or of the overall protein structure. This enhanced plasticity seems in turn to be induced by the weak thermal stability of psychrophilic enzymes. The adaptation strategies are beginning to be understood thanks to recent advances in the elucidation of the molecular characteristics of cold-adapted enzymes derived from X-ray crystallography, protein engineering and biophysical methods. Psychrophilic organisms and their enzymes have, in recent years, increasingly attracted the attention of the scientific community due to their peculiar properties that render them particularly useful in investigating the possible relationship existing between stability, flexibility and specific activity and as valuable tools for biotechnological purposes.

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Year:  2002        PMID: 12171655      PMCID: PMC1692995          DOI: 10.1098/rstb.2002.1105

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  41 in total

1.  Improving the catalytic activity of a thermophilic enzyme at low temperatures.

Authors:  A Merz; M C Yee; H Szadkowski; G Pappenberger; A Crameri; W P Stemmer; C Yanofsky; K Kirschner
Journal:  Biochemistry       Date:  2000-02-08       Impact factor: 3.162

2.  Thermodynamic stability of a cold-active alpha-amylase from the Antarctic bacterium Alteromonas haloplanctis.

Authors:  G Feller; D d'Amico; C Gerday
Journal:  Biochemistry       Date:  1999-04-06       Impact factor: 3.162

Review 3.  Molecular adaptations in psychrophilic bacteria: potential for biotechnological applications.

Authors:  N J Russell
Journal:  Adv Biochem Eng Biotechnol       Date:  1998       Impact factor: 2.635

4.  Structures of the psychrophilic Alteromonas haloplanctis alpha-amylase give insights into cold adaptation at a molecular level.

Authors:  N Aghajari; G Feller; C Gerday; R Haser
Journal:  Structure       Date:  1998-12-15       Impact factor: 5.006

5.  Crystal structures of the psychrophilic alpha-amylase from Alteromonas haloplanctis in its native form and complexed with an inhibitor.

Authors:  N Aghajari; G Feller; C Gerday; R Haser
Journal:  Protein Sci       Date:  1998-03       Impact factor: 6.725

6.  Directed evolution of a fungal peroxidase.

Authors:  J R Cherry; M H Lamsa; P Schneider; J Vind; A Svendsen; A Jones; A H Pedersen
Journal:  Nat Biotechnol       Date:  1999-04       Impact factor: 54.908

7.  Further improvement of the thermal stability of a partially stabilized Bacillus subtilis 3-isopropylmalate dehydrogenase variant by random and site-directed mutagenesis.

Authors:  S Akanuma; A Yamagishi; N Tanaka; T Oshima
Journal:  Eur J Biochem       Date:  1999-03

8.  Serial increase in the thermal stability of 3-isopropylmalate dehydrogenase from Bacillus subtilis by experimental evolution.

Authors:  S Akanuma; A Yamagishi; N Tanaka; T Oshima
Journal:  Protein Sci       Date:  1998-03       Impact factor: 6.725

9.  Directed evolution converts subtilisin E into a functional equivalent of thermitase.

Authors:  H Zhao; F H Arnold
Journal:  Protein Eng       Date:  1999-01

10.  Adjustment of conformational flexibility is a key event in the thermal adaptation of proteins.

Authors:  P Závodszky; J Kardos; G A Petsko
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-23       Impact factor: 11.205

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  64 in total

1.  Cold-adapted digestive aspartic protease of the clawed lobsters Homarus americanus and Homarus gammarus: biochemical characterization.

Authors:  Liliana Rojo; Fernando García-Carreño; Maria de Los Angeles Navarrete del Toro
Journal:  Mar Biotechnol (NY)       Date:  2012-05-31       Impact factor: 3.619

2.  A chymotrypsin from the Digestive Tract of California Spiny Lobster, Panulirus interruptus: Purification and Biochemical Characterization.

Authors:  Betsaida Bibo-Verdugo; Liliana Rojo-Arreola; Maria A Navarrete-del-Toro; Fernando García-Carreño
Journal:  Mar Biotechnol (NY)       Date:  2015-04-16       Impact factor: 3.619

3.  Molecular adaptation in the ice worm, Mesenchytraeus solifugus: divergence of energetic-associated genes.

Authors:  Angela H Farrell; Kristi A Hohenstein; Daniel H Shain
Journal:  J Mol Evol       Date:  2004-11       Impact factor: 2.395

4.  Four kingdoms on glacier ice: convergent energetic processes boost energy levels as temperatures fall.

Authors:  Michael J Napolitano; Daniel H Shain
Journal:  Proc Biol Sci       Date:  2004-08-07       Impact factor: 5.349

5.  The active site is the least stable structure in the unfolding pathway of a multidomain cold-adapted alpha-amylase.

Authors:  Khawar S Siddiqui; Georges Feller; Salvino D'Amico; Charles Gerday; Laura Giaquinto; Ricardo Cavicchioli
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

Review 6.  Mechanism of bacterial adaptation to low temperature.

Authors:  M K Chattopadhyay
Journal:  J Biosci       Date:  2006-03       Impact factor: 1.826

7.  Roles of static and dynamic domains in stability and catalysis of adenylate kinase.

Authors:  Euiyoung Bae; George N Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-01       Impact factor: 11.205

8.  Protein engineering of a cold-active beta-galactosidase from Arthrobacter sp. SB to increase lactose hydrolysis reveals new sites affecting low temperature activity.

Authors:  James A Coker; Jean E Brenchley
Journal:  Extremophiles       Date:  2006-05-31       Impact factor: 2.395

Review 9.  Cold-loving microbes, plants, and animals--fundamental and applied aspects.

Authors:  R Margesin; G Neuner; K B Storey
Journal:  Naturwissenschaften       Date:  2006-10-13

Review 10.  Coping with our cold planet.

Authors:  Debora Frigi Rodrigues; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2008-01-18       Impact factor: 4.792

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