Literature DB >> 12167359

Heterogeneity of genome and proteome content in bacteria, archaea, and eukaryotes.

Samuel Karlin1, Luciano Brocchieri, Jonathan Trent, B Edwin Blaisdell, Jan Mrázek.   

Abstract

Our analysis compares bacteria, archaea, and eukaryota with respect to a wide assortment of genome and proteome properties. These properties include ribosomal protein gene distributions, chaperone protein contrasts, major variation of transcription/translation factors, gene encoding pathways of energy metabolism, and predicted protein expression levels. Significant differences within and between the three domains of life include protein lengths, information processing procedures, many metabolic and lipid biosynthesis pathways, cellular controls, and regulatory proteins. Differences among genomes are influenced by lifestyle, habitat, physiology, energy sources, and other factors. Copyright 2002 Elsevier Science (USA)

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Year:  2002        PMID: 12167359     DOI: 10.1006/tpbi.2002.1606

Source DB:  PubMed          Journal:  Theor Popul Biol        ISSN: 0040-5809            Impact factor:   1.570


  17 in total

1.  Global analysis of predicted proteomes: functional adaptation of physical properties.

Authors:  Christopher G Knight; Rees Kassen; Holger Hebestreit; Paul B Rainey
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-18       Impact factor: 11.205

2.  Environmental signatures in proteome properties.

Authors:  Luciano Brocchieri
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

Review 3.  Statistical signals in bioinformatics.

Authors:  Samuel Karlin
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-12       Impact factor: 11.205

4.  Genomic and proteomic comparisons between bacterial and archaeal genomes and related comparisons with the yeast and fly genomes.

Authors:  Samuel Karlin; Luciano Brocchieri; Allan Campbell; Martha Cyert; Jan Mrázek
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-09       Impact factor: 11.205

5.  Size of the protein-coding genome and rate of molecular evolution.

Authors:  Zoran A Rajic; Gradimir M Jankovic; Ana Vidovic; Natasa M Milic; Dejan Skoric; Milorad Pavlovic; Vladimir Lazarevic
Journal:  J Hum Genet       Date:  2005-05-10       Impact factor: 3.172

6.  pNEB193-derived suicide plasmids for gene deletion and protein expression in the methane-producing archaeon, Methanosarcina acetivorans.

Authors:  Mitchell T Shea; Mary E Walter; Nikolas Duszenko; Anne-Lise Ducluzeau; Jared Aldridge; Shannon K King; Nicole R Buan
Journal:  Plasmid       Date:  2016-02-11       Impact factor: 3.466

7.  Genus specific evolution of codon usage and nucleotide compositional traits of poxviruses.

Authors:  Sourav Roychoudhury; Archana Pan; Debaprasad Mukherjee
Journal:  Virus Genes       Date:  2011-01-11       Impact factor: 2.198

8.  Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus.

Authors:  Ludovic V Mallet; Jennifer Becq; Patrick Deschavanne
Journal:  BMC Genomics       Date:  2010-03-12       Impact factor: 3.969

9.  Molecular characterization of cold adaptation based on ortholog protein sequences from Vibrionaceae species.

Authors:  Steinar Thorvaldsen; Erik Hjerde; Chris Fenton; Nils P Willassen
Journal:  Extremophiles       Date:  2007-06-19       Impact factor: 3.035

10.  Applying small-scale DNA signatures as an aid in assembling soybean chromosome sequences.

Authors:  Myron Peto; David M Grant; Randy C Shoemaker; Steven B Cannon
Journal:  Adv Bioinformatics       Date:  2010-08-19
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