Literature DB >> 12163067

Combinatorial protein design.

Jeffery G Saven1.   

Abstract

Combinatorial protein libraries permit the examination of a wide range of sequences. Such methods are being used for denovo design and to investigate the determinants of protein folding. The exponentially large number of possible sequences, however, necessitates restrictions on the diversity of sequences in a combinatorial library. Recently, progress has been made in developing theoretical tools to bias and characterize the ensemble of sequences that fold into a given structure - tools that can be applied to the design and interpretation of combinatorial experiments.

Mesh:

Substances:

Year:  2002        PMID: 12163067     DOI: 10.1016/s0959-440x(02)00347-0

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  13 in total

1.  Engineering a protein-protein interface using a computationally designed library.

Authors:  Gurkan Guntas; Carrie Purbeck; Brian Kuhlman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

2.  Discovery of entry inhibitors for HIV-1 via a new de novo protein design framework.

Authors:  M L Bellows; M S Taylor; P A Cole; L Shen; R F Siliciano; H K Fung; C A Floudas
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

Review 3.  Computational tools for epitope vaccine design and evaluation.

Authors:  Linling He; Jiang Zhu
Journal:  Curr Opin Virol       Date:  2015-03-31       Impact factor: 7.090

4.  IPRO: an iterative computational protein library redesign and optimization procedure.

Authors:  Manish C Saraf; Gregory L Moore; Nina M Goodey; Vania Y Cao; Stephen J Benkovic; Costas D Maranas
Journal:  Biophys J       Date:  2006-03-02       Impact factor: 4.033

5.  The network of sequence flow between protein structures.

Authors:  Leonid Meyerguz; Jon Kleinberg; Ron Elber
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-27       Impact factor: 11.205

6.  Sequence analysis and rule development of predicting protein stability change upon mutation using decision tree model.

Authors:  Liang-Tsung Huang; M Michael Gromiha; Shinn-Ying Ho
Journal:  J Mol Model       Date:  2007-03-30       Impact factor: 1.810

7.  Computational design and experimental study of tighter binding peptides to an inactivated mutant of HIV-1 protease.

Authors:  Michael D Altman; Ellen A Nalivaika; Moses Prabu-Jeyabalan; Celia A Schiffer; Bruce Tidor
Journal:  Proteins       Date:  2008-02-15

Review 8.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

9.  Accurate solution of multi-region continuum biomolecule electrostatic problems using the linearized Poisson-Boltzmann equation with curved boundary elements.

Authors:  Michael D Altman; Jaydeep P Bardhan; Jacob K White; Bruce Tidor
Journal:  J Comput Chem       Date:  2009-01-15       Impact factor: 3.376

10.  A search for energy minimized sequences of proteins.

Authors:  Anupam Nath Jha; G K Ananthasuresh; Saraswathi Vishveshwara
Journal:  PLoS One       Date:  2009-08-19       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.