Literature DB >> 12149563

Reproducability and transferability of topological properties; experimental charge density of the hexapeptide cyclo-(D,L-Pro)2-(L-Ala)4 monohydrate.

B Dittrich1, T Koritsánszky, M Grosche, W Scherer, R Flaig, A Wagner, H G Krane, H Kessler, C Riemer, A M M Schreurs, P Luger.   

Abstract

The charge density of a hexapeptide was determined from high-resolution CCD area-detector experiments at 100 K. Two datasets, one from a rotating anode and a second one from synchrotron radiation, were measured and the results are compared. The data are interpreted in terms of the 'rigid pseudoatom' model. The topology of the experimental density is analyzed and compared with the topology of the constituting amino acids, and shows good agreement. All critical points of the electron density at the covalent and hydrogen bonds, as well as those of the Laplacian, were located. With respect to the transferability of electronic and bond topological properties the six peptide bonds were compared with values given in the literature.

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Year:  2002        PMID: 12149563     DOI: 10.1107/s0108768102005839

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  10 in total

Review 1.  Understanding and designing head-to-tail cyclic peptides.

Authors:  Diana P Slough; Sean M McHugh; Yu-Shan Lin
Journal:  Biopolymers       Date:  2018-03-12       Impact factor: 2.505

2.  Electrostatic complementarity in an aldose reductase complex from ultra-high-resolution crystallography and first-principles calculations.

Authors:  Nicolas Muzet; Benoît Guillot; Christian Jelsch; Eduardo Howard; Claude Lecomte
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-10       Impact factor: 11.205

3.  Molecular reactivity of busulfan through its experimental electrostatic properties in the solid state.

Authors:  Nour Eddine Ghermani; Anne Spasojević-de Biré; Nouzha Bouhmaida; Souad Ouharzoune; Jérôme Bouligand; Anne Layre; Ruxandra Gref; Patrick Couvreur
Journal:  Pharm Res       Date:  2004-04       Impact factor: 4.200

Review 4.  Elucidating Solution Structures of Cyclic Peptides Using Molecular Dynamics Simulations.

Authors:  Jovan Damjanovic; Jiayuan Miao; He Huang; Yu-Shan Lin
Journal:  Chem Rev       Date:  2021-01-11       Impact factor: 60.622

5.  Hydrogen atoms can be located accurately and precisely by x-ray crystallography.

Authors:  Magdalena Woińska; Simon Grabowsky; Paulina M Dominiak; Krzysztof Woźniak; Dylan Jayatilaka
Journal:  Sci Adv       Date:  2016-05-27       Impact factor: 14.136

6.  Fragmentation and transferability in Hirshfeld atom refinement.

Authors:  Michał Chodkiewicz; Sylwia Pawlędzio; Magdalena Woińska; Krzysztof Woźniak
Journal:  IUCrJ       Date:  2022-02-26       Impact factor: 4.769

7.  Polarizable atomic multipole X-ray refinement: application to peptide crystals.

Authors:  Michael J Schnieders; Timothy D Fenn; Vijay S Pande; Axel T Brunger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-08-14

Review 8.  Contributions of charge-density research to medicinal chemistry.

Authors:  Birger Dittrich; Chérif F Matta
Journal:  IUCrJ       Date:  2014-09-23       Impact factor: 4.769

9.  A method to estimate statistical errors of properties derived from charge-density modelling.

Authors:  Bertrand Fournier; Benoît Guillot; Claude Lecomte; Eduardo C Escudero-Adán; Christian Jelsch
Journal:  Acta Crystallogr A Found Adv       Date:  2018-05-03       Impact factor: 2.290

10.  fragHAR: towards ab initio quantum-crystallographic X-ray structure refinement for polypeptides and proteins.

Authors:  Justin Bergmann; Max Davidson; Esko Oksanen; Ulf Ryde; Dylan Jayatilaka
Journal:  IUCrJ       Date:  2020-01-17       Impact factor: 4.769

  10 in total

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