Literature DB >> 12149555

Crystal structure prediction of small organic molecules: a second blind test.

W D Sam Motherwell1, Herman L Ammon, Jack D Dunitz, Alexander Dzyabchenko, Peter Erk, Angelo Gavezzotti, Detlef W M Hofmann, Frank J J Leusen, Jos P M Lommerse, Wijnand T M Mooij, Sarah L Price, Harold Scheraga, Bernd Schweizer, Martin U Schmidt, Bouke P van Eijck, Paul Verwer, Donald E Williams.   

Abstract

The first collaborative workshop on crystal structure prediction (CSP1999) has been followed by a second workshop (CSP2001) held at the Cambridge Crystallographic Data Centre. The 17 participants were given only the chemical diagram for three organic molecules and were invited to test their prediction programs within a range of named common space groups. Several different computer programs were used, using the methodology wherein a molecular model is used to construct theoretical crystal structures in given space groups, and prediction is usually based on the minimum calculated lattice energy. A maximum of three predictions were allowed per molecule. The results showed two correct predictions for the first molecule, four for the second molecule and none for the third molecule (which had torsional flexibility). The correct structure was often present in the sorted low-energy lists from the participants but at a ranking position greater than three. The use of non-indexed powder diffraction data was investigated in a secondary test, after completion of the ab initio submissions. Although no one method can be said to be completely reliable, this workshop gives an objective measure of the success and failure of current methodologies.

Entities:  

Year:  2002        PMID: 12149555     DOI: 10.1107/s0108768102005669

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  19 in total

1.  An algorithm to filter out packing arrangements based on steric clashes.

Authors:  Bohdan Koudelka; Pavla Capkova
Journal:  J Mol Model       Date:  2003-09-27       Impact factor: 1.810

2.  Exercises in prognostication: crystal structures and protein folding.

Authors:  Jack D Dunitz; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-27       Impact factor: 11.205

3.  The role of molecular structure in the crystal polymorphism of local anesthetic drugs: crystal polymorphism of local anesthetic drugs, part X.

Authors:  Andrea C Schmidt
Journal:  Pharm Res       Date:  2005-11-16       Impact factor: 4.200

4.  Comparison of Methods To Reweight from Classical Molecular Simulations to QM/MM Potentials.

Authors:  Eric C Dybeck; Gerhard König; Bernard R Brooks; Michael R Shirts
Journal:  J Chem Theory Comput       Date:  2016-03-23       Impact factor: 6.006

5.  Empirically augmented density functional theory for predicting lattice energies of aspirin, acetaminophen polymorphs, and ibuprofen homochiral and racemic crystals.

Authors:  Tonglei Li; Shaoxin Feng
Journal:  Pharm Res       Date:  2006-08-23       Impact factor: 4.200

6.  Unmasking a third polymorph of a benchmark crystal-structure-prediction compound.

Authors:  Saikat Roy; Adam J Matzger
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

7.  Synthesis and magnetic properties of the novel dithiadiazolyl radical, p-NCC6F4C6F4CNSSN*.

Authors:  Antonio Alberola; Robert J Less; Fernando Palacio; Christopher M Pask; Jeremy M Rawson
Journal:  Molecules       Date:  2004-08-31       Impact factor: 4.411

8.  Crystal structure prediction of flexible molecules using parallel genetic algorithms with a standard force field.

Authors:  Seonah Kim; Anita M Orendt; Marta B Ferraro; Julio C Facelli
Journal:  J Comput Chem       Date:  2009-10       Impact factor: 3.376

9.  The polymorphism of indomethacin: an analysis by density functional theory calculations.

Authors:  Clare Aubrey-Medendorp; Matthew J Swadley; Tonglei Li
Journal:  Pharm Res       Date:  2007-05-31       Impact factor: 4.200

10.  Towards crystal structure prediction of complex organic compounds--a report on the fifth blind test.

Authors:  David A Bardwell; Claire S Adjiman; Yelena A Arnautova; Ekaterina Bartashevich; Stephan X M Boerrigter; Doris E Braun; Aurora J Cruz-Cabeza; Graeme M Day; Raffaele G Della Valle; Gautam R Desiraju; Bouke P van Eijck; Julio C Facelli; Marta B Ferraro; Damian Grillo; Matthew Habgood; Detlef W M Hofmann; Fridolin Hofmann; K V Jovan Jose; Panagiotis G Karamertzanis; Andrei V Kazantsev; John Kendrick; Liudmila N Kuleshova; Frank J J Leusen; Andrey V Maleev; Alston J Misquitta; Sharmarke Mohamed; Richard J Needs; Marcus A Neumann; Denis Nikylov; Anita M Orendt; Rumpa Pal; Constantinos C Pantelides; Chris J Pickard; Louise S Price; Sarah L Price; Harold A Scheraga; Jacco van de Streek; Tejender S Thakur; Siddharth Tiwari; Elisabetta Venuti; Ilia K Zhitkov
Journal:  Acta Crystallogr B       Date:  2011-11-17
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