Literature DB >> 12147758

Comparative genomic analysis of plant-associated bacteria.

M A Van Sluys1, C B Monteiro-Vitorello, L E A Camargo, C F M Menck, A C R Da Silva, J A Ferro, M C Oliveira, J C Setubal, J P Kitajima, A J Simpson.   

Abstract

This review deals with a comparative analysis of seven genome sequences from plant-associated bacteria. These are the genomes of Agrobacterium tumefaciens, Mesorhizobium loti, Sinorhizobium meliloti, Xanthomonas campestris pv campestris, Xanthomonas axonopodis pv citri, Xylella fastidiosa, and Ralstonia solanacearum. Genome structure and the metabolism pathways available highlight the compromise between the genome size and lifestyle. Despite the recognized importance of the type III secretion system in controlling host compatibility, its presence is not universal in all necrogenic pathogens. Hemolysins, hemagglutinins, and some adhesins, previously reported only for mammalian pathogens, are present in most organisms discussed. Different numbers and combinations of cell wall degrading enzymes and genes to overcome the oxidative burst generally induced by the plant host are characterized in these genomes. A total of 19 genes not involved in housekeeping functions were found common to all these bacteria.

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Year:  2002        PMID: 12147758     DOI: 10.1146/annurev.phyto.40.030402.090559

Source DB:  PubMed          Journal:  Annu Rev Phytopathol        ISSN: 0066-4286            Impact factor:   13.078


  43 in total

1.  The Pathogen of the Great Barrier Reef Sponge Rhopaloeides odorabile Is a New Strain of Pseudoalteromonas agarivorans Containing Abundant and Diverse Virulence-Related Genes.

Authors:  Jayanta D Choudhury; Arnab Pramanik; Nicole S Webster; Lyndon E Llewellyn; Ratan Gachhui; Joydeep Mukherjee
Journal:  Mar Biotechnol (NY)       Date:  2015-04-03       Impact factor: 3.619

2.  Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition.

Authors:  Vinita Joardar; Magdalen Lindeberg; Robert W Jackson; Jeremy Selengut; Robert Dodson; Lauren M Brinkac; Sean C Daugherty; Robert Deboy; A Scott Durkin; Michelle Gwinn Giglio; Ramana Madupu; William C Nelson; M J Rosovitz; Steven Sullivan; Jonathan Crabtree; Todd Creasy; Tanja Davidsen; Dan H Haft; Nikhat Zafar; Liwei Zhou; Rebecca Halpin; Tara Holley; Hoda Khouri; Tamara Feldblyum; Owen White; Claire M Fraser; Arun K Chatterjee; Sam Cartinhour; David J Schneider; John Mansfield; Alan Collmer; C Robin Buell
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

Review 3.  Bacterial elicitation and evasion of plant innate immunity.

Authors:  Robert B Abramovitch; Jeffrey C Anderson; Gregory B Martin
Journal:  Nat Rev Mol Cell Biol       Date:  2006-08       Impact factor: 94.444

4.  Crystallization and preliminary X-ray diffraction analysis of a glutathione S-transferase from Xylella fastidiosa.

Authors:  Wanius Garcia; Regiane F Travensolo; Nathalia C Rodrigues; João R C Muniz; Célia S Caruso; Eliana G M Lemos; Ana Paula U Araujo; Emanuel Carrilho
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-01-18

5.  Expression of Xylella fastidiosa fimbrial and afimbrial proteins during biofilm formation.

Authors:  R Caserta; M A Takita; M L Targon; L K Rosselli-Murai; A P de Souza; L Peroni; D R Stach-Machado; A Andrade; C A Labate; E W Kitajima; M A Machado; A A de Souza
Journal:  Appl Environ Microbiol       Date:  2010-05-14       Impact factor: 4.792

Review 6.  Pathogenomics of Xanthomonas: understanding bacterium-plant interactions.

Authors:  Robert P Ryan; Frank-Jörg Vorhölter; Neha Potnis; Jeffrey B Jones; Marie-Anne Van Sluys; Adam J Bogdanove; J Maxwell Dow
Journal:  Nat Rev Microbiol       Date:  2011-04-11       Impact factor: 60.633

7.  Comparative Genomics, from the Annotated Genome to Valuable Biological Information: A Case Study.

Authors:  Sabina Zoledowska; Agata Motyka-Pomagruk; Agnieszka Misztak; Ewa Lojkowska
Journal:  Methods Mol Biol       Date:  2021

8.  Crystallization and preliminary diffraction analysis of the catalytic domain of major extracellular endoglucanase from Xanthomonas campestris pv. campestris.

Authors:  Flávio R Rosseto; Ana C Puhl; Maxuel O Andrade; Igor Polikarpov
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-01-31

9.  The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader.

Authors:  Athanasios Lykidis; Danilo Pérez-Pantoja; Thomas Ledger; Kostantinos Mavromatis; Iain J Anderson; Natalia N Ivanova; Sean D Hooper; Alla Lapidus; Susan Lucas; Bernardo González; Nikos C Kyrpides
Journal:  PLoS One       Date:  2010-03-22       Impact factor: 3.240

10.  The monofunctional catalase KatE of Xanthomonas axonopodis pv. citri is required for full virulence in citrus plants.

Authors:  María Laura Tondo; Silvana Petrocelli; Jorgelina Ottado; Elena G Orellano
Journal:  PLoS One       Date:  2010-05-24       Impact factor: 3.240

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