Literature DB >> 12127776

Imprinted genes: identification by chromosome rearrangements and post-genomic strategies.

Rebecca J Oakey1, Colin V Beechey.   

Abstract

Imprinted genes are differentially expressed from the maternally and paternally inherited alleles. Accordingly, inheritance of both copies of an imprinted chromosome or region from a single parent leads to the mis-expression of the imprinted genes present in the selected region. Strains of mice with reciprocal and Robertsonian chromosomal translocations or mice with engineered chromosomal rearrangements can be used to produce progeny where both copies of a chromosomal region are inherited from one parent. In combination with systematic differential expression and methylation-based approaches, these mice can be used to identify novel imprinted genes. Advances in genome sequencing and computer-based technologies have facilitated this approach to finding imprinted genes.

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Year:  2002        PMID: 12127776      PMCID: PMC2814292          DOI: 10.1016/s0168-9525(02)02708-7

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  43 in total

1.  Screening for imprinted genes by allelic message display: identification of a paternally expressed gene impact on mouse chromosome 18.

Authors:  Y Hagiwara; M Hirai; K Nishiyama; I Kanazawa; T Ueda; Y Sakaki; T Ito
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-19       Impact factor: 11.205

2.  Peg5/Neuronatin is an imprinted gene located on sub-distal chromosome 2 in the mouse.

Authors:  F Kagitani; Y Kuroiwa; S Wakana; T Shiroishi; N Miyoshi; S Kobayashi; M Nishida; T Kohda; T Kaneko-Ishino; F Ishino
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

Review 3.  The sins of the fathers and mothers: genomic imprinting in mammalian development.

Authors:  S M Tilghman
Journal:  Cell       Date:  1999-01-22       Impact factor: 41.582

4.  Analysis and identification of imprinted genes.

Authors:  G Kelsey; W Reik
Journal:  Methods       Date:  1998-02       Impact factor: 3.608

5.  A maternally methylated CpG island in KvLQT1 is associated with an antisense paternal transcript and loss of imprinting in Beckwith-Wiedemann syndrome.

Authors:  N J Smilinich; C D Day; G V Fitzpatrick; G M Caldwell; A C Lossie; P R Cooper; A C Smallwood; J A Joyce; P N Schofield; W Reik; R D Nicholls; R Weksberg; D J Driscoll; E R Maher; T B Shows; M J Higgins
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-06       Impact factor: 11.205

6.  A cluster of oppositely imprinted transcripts at the Gnas locus in the distal imprinting region of mouse chromosome 2.

Authors:  J Peters; S F Wroe; C A Wells; H J Miller; D Bodle; C V Beechey; C M Williamson; G Kelsey
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

7.  Genomic imprinting of Mash2, a mouse gene required for trophoblast development.

Authors:  F Guillemot; T Caspary; S M Tilghman; N G Copeland; D J Gilbert; N A Jenkins; D J Anderson; A L Joyner; J Rossant; A Nagy
Journal:  Nat Genet       Date:  1995-03       Impact factor: 38.330

8.  The Angelman syndrome candidate gene, UBE3A/E6-AP, is imprinted in brain.

Authors:  C Rougeulle; H Glatt; M Lalande
Journal:  Nat Genet       Date:  1997-09       Impact factor: 38.330

9.  Peg1/Mest imprinted gene on chromosome 6 identified by cDNA subtraction hybridization.

Authors:  T Kaneko-Ishino; Y Kuroiwa; N Miyoshi; T Kohda; R Suzuki; M Yokoyama; S Viville; S C Barton; F Ishino; M A Surani
Journal:  Nat Genet       Date:  1995-09       Impact factor: 38.330

10.  Peg3 imprinted gene on proximal chromosome 7 encodes for a zinc finger protein.

Authors:  Y Kuroiwa; T Kaneko-Ishino; F Kagitani; T Kohda; L L Li; M Tada; R Suzuki; M Yokoyama; T Shiroishi; S Wakana; S C Barton; F Ishino; M A Surani
Journal:  Nat Genet       Date:  1996-02       Impact factor: 38.330

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  13 in total

1.  X-linked and lineage-dependent inheritance of coping responses to stress.

Authors:  Nasim Ahmadiyeh; Gary A Churchill; Kazuhiro Shimomura; Leah C Solberg; Joseph S Takahashi; Eva E Redei
Journal:  Mamm Genome       Date:  2003-11       Impact factor: 2.957

Review 2.  Methods for transcriptional profiling in plants. Be fruitful and replicate.

Authors:  Blake C Meyers; David W Galbraith; Timothy Nelson; Vikas Agrawal
Journal:  Plant Physiol       Date:  2004-06-01       Impact factor: 8.340

3.  Identification and resolution of artifacts in the interpretation of imprinted gene expression.

Authors:  Charlotte Proudhon; Déborah Bourc'his
Journal:  Brief Funct Genomics       Date:  2010-09-08       Impact factor: 4.241

4.  Phenotype analysis by MUC2, MUC5AC, MUC6, and CD10 expression in Epstein-Barr virus-associated gastric carcinoma.

Authors:  Rita Rani Barua; Hiroshi Uozaki; Ja-Mun Chong; Tetsuo Ushiku; Rumi Hino; Moon-Sung Chang; Hideo Nagai; Masashi Fukayama
Journal:  J Gastroenterol       Date:  2006-08       Impact factor: 7.527

5.  Next-Generation Sequencing Techniques Reveal that Genomic Imprinting Is Absent in Day-Old Gallus gallus domesticus Brains.

Authors:  Qiong Wang; Kaiyang Li; Daixi Zhang; Junying Li; Guiyun Xu; Jiangxia Zheng; Ning Yang; Lujiang Qu
Journal:  PLoS One       Date:  2015-07-10       Impact factor: 3.240

6.  Whole-exome sequencing analysis in a case of primary congenital glaucoma due to the partial uniparental isodisomy.

Authors:  Parisima Ghaffarian Zavarzadeh; Morteza Bonyadi; Zahra Abedi
Journal:  Genomics Inform       Date:  2022-09-30

Review 7.  Investigating parent of origin effects in studies of type 2 diabetes and obesity.

Authors:  Evadnie Rampersaud; Braxton D Mitchell; Adam C Naj; Toni I Pollin
Journal:  Curr Diabetes Rev       Date:  2008-11

8.  Parent of origin effects on age at colorectal cancer diagnosis.

Authors:  Noralane M Lindor; Kari G Rabe; Gloria M Petersen; Helen Chen; Bharati Bapat; John Hopper; Joanne Young; Mark Jenkins; John Potter; Polly Newcomb; Allyson Templeton; Loic Lemarchand; John Grove; Michael R Burgio; Robert Haile; Jane Green; Michael O Woods; Daniela Seminara; Paul J Limburg; Stephen N Thibodeau
Journal:  Int J Cancer       Date:  2010-07-15       Impact factor: 7.396

Review 9.  Genetic and epigenetic alterations as biomarkers for cancer detection, diagnosis and prognosis.

Authors:  Zdenko Herceg; Pierre Hainaut
Journal:  Mol Oncol       Date:  2007-03-14       Impact factor: 6.603

10.  WAMIDEX: a web atlas of murine genomic imprinting and differential expression.

Authors:  Reiner Schulz; Kathryn Woodfine; Trevelyan R Menheniott; Deborah Bourc'his; Timothy Bestor; Rebecca J Oakey
Journal:  Epigenetics       Date:  2008-03-18       Impact factor: 4.528

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