Literature DB >> 12127520

Rapid solid-phase synthesis of DNA-binding pyrrole-imidazole polyamides.

Peter O Krutzik1, A Richard Chamberlin.   

Abstract

Pyrrole-imidazole polyamides can be synthesized to target predetermined sequences of DNA with nanomolar affinity and high specificity, and have been shown to modulate gene transcription both in vitro and in vivo. To make polyamides more readily available to biological laboratories, we have developed a rapid solid-phase synthesis based on azabenzotriazole (OAt) activation that decreases synthesis time 60% compared to standard benzotriazole (OBt) techniques, without loss of yield or purity.

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Year:  2002        PMID: 12127520     DOI: 10.1016/s0960-894x(02)00359-1

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  8 in total

1.  Modulation of DNA-polyamide interaction by β-alanine substitutions: a study of positional effects on binding affinity, kinetics and thermodynamics.

Authors:  Shuo Wang; Karl Aston; Kevin J Koeller; G Davis Harris; Nigam P Rath; James K Bashkin; W David Wilson
Journal:  Org Biomol Chem       Date:  2014-10-14       Impact factor: 3.876

2.  HPV episome levels are potently decreased by pyrrole-imidazole polyamides.

Authors:  Terri G Edwards; Kevin J Koeller; Urszula Slomczynska; Kam Fok; Michael Helmus; James K Bashkin; Chris Fisher
Journal:  Antiviral Res       Date:  2011-06-02       Impact factor: 5.970

3.  Oligomerization route to Py-Im polyamide macrocycles.

Authors:  David M Chenoweth; Daniel A Harki; Peter B Dervan
Journal:  Org Lett       Date:  2009-08-20       Impact factor: 6.005

4.  Solution-phase synthesis of pyrrole-imidazole polyamides.

Authors:  David M Chenoweth; Daniel A Harki; Peter B Dervan
Journal:  J Am Chem Soc       Date:  2009-05-27       Impact factor: 15.419

5.  Application of Cu(I)-catalyzed azide-alkyne cycloaddition for the design and synthesis of sequence specific probes targeting double-stranded DNA.

Authors:  Svetlana V Vasilyeva; Vyacheslav V Filichev; Alexandre S Boutorine
Journal:  Beilstein J Org Chem       Date:  2016-06-30       Impact factor: 2.883

Review 6.  Fluorescent probes for nucleic Acid visualization in fixed and live cells.

Authors:  Alexandre S Boutorine; Darya S Novopashina; Olga A Krasheninina; Karine Nozeret; Alya G Venyaminova
Journal:  Molecules       Date:  2013-12-11       Impact factor: 4.411

7.  Microwave assisted synthesis of Py-Im polyamides.

Authors:  James W Puckett; Joshua T Green; Peter B Dervan
Journal:  Org Lett       Date:  2012-05-11       Impact factor: 6.005

8.  Synthesis, Molecular Docking Screening and Anti-Proliferative Potency Evaluation of Some New Imidazo[2,1-b]Thiazole Linked Thiadiazole Conjugates.

Authors:  Huda R M Rashdan; Aboubakr H Abdelmonsef; Ihsan A Shehadi; Sobhi M Gomha; Abdel Mohsen M Soliman; Huda K Mahmoud
Journal:  Molecules       Date:  2020-10-28       Impact factor: 4.411

  8 in total

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