Literature DB >> 12124262

Steered molecular dynamics simulations on the "tail helix latch" hypothesis in the gelsolin activation process.

Feng Cheng1, Jianhua Shen, Xiaomin Luo, Hualiang Jiang, Kaixian Chen.   

Abstract

The molecular basis of the "tail helix latch" hypothesis in the gelsolin activation process has been studied by using the steered molecular dynamics simulations. In the present nanosecond scale simulations, the tail helix of gelsolin was pulled away from the S2 binding surface, and the required forces were calculated, from which the properties of binding between the tail helix and S2 domain and their dynamic unbinding processes were obtained. The force profile provides a detailed rupture mechanism that includes six major unbinding steps. In particular, the hydrogen bonds formed between Arg-207 and Asp-744 and between Arg-221 and Leu-753 are of the most important interaction pairs. The two hydrogen bond "clamps" stabilize the complex. The subsequent simulation on Arg-207-Ala (R207A) mutation of gelsolin indicated that this mutation facilitates the unbinding of the tail helix and that the contribution of the hydrogen bond between Arg-207 and Asp-744 to the binding is more than 50%, which offers a new clue for further mutagenesis study on the activation mechanism of gelsolin. Surrounding water molecules enhance the stability of the tail helix and facilitate the rupture process. Additionally, temperature also has a significant effect on the conformation of the arginine and arginine-related interactions, which revealed the molecular basis of the temperature dependence in gelsolin activation.

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Year:  2002        PMID: 12124262      PMCID: PMC1302184          DOI: 10.1016/S0006-3495(02)75206-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  20 in total

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Authors:  B Isralewitz; M Gao; K Schulten
Journal:  Curr Opin Struct Biol       Date:  2001-04       Impact factor: 6.809

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Journal:  Science       Date:  1999-12-03       Impact factor: 47.728

5.  Plasma and cytoplasmic gelsolins are encoded by a single gene and contain a duplicated actin-binding domain.

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Journal:  Nature       Date:  1986 Oct 2-8       Impact factor: 49.962

6.  Angiotensinogen genotype affects renal and adrenal responses to angiotensin II in essential hypertension.

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Journal:  Circulation       Date:  2002-04-23       Impact factor: 29.690

7.  Ca2+ regulation of gelsolin by its C-terminal tail.

Authors:  K M Lin; M Mejillano; H L Yin
Journal:  J Biol Chem       Date:  2000-09-08       Impact factor: 5.157

8.  Nucleotide sequence of pig plasma gelsolin. Comparison of protein sequence with human gelsolin and other actin-severing proteins shows strong homologies and evidence for large internal repeats.

Authors:  M Way; A Weeds
Journal:  J Mol Biol       Date:  1988-10-20       Impact factor: 5.469

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Authors:  C Chaponnier; P A Janmey; H L Yin
Journal:  J Cell Biol       Date:  1986-10       Impact factor: 10.539

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Authors:  J Bryan
Journal:  J Cell Biol       Date:  1988-05       Impact factor: 10.539

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  3 in total

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Authors:  Shibaji Ghosh; Kalyanashis Jana; Bishwajit Ganguly
Journal:  J Comput Aided Mol Des       Date:  2018-07-06       Impact factor: 3.686

2.  Revealing the importance of linkers in K-series oxime reactivators for tabun-inhibited AChE using quantum chemical, docking and SMD studies.

Authors:  Shibaji Ghosh; Nellore Bhanu Chandar; Kalyanashis Jana; Bishwajit Ganguly
Journal:  J Comput Aided Mol Des       Date:  2017-06-23       Impact factor: 3.686

3.  Reversible pH-controlled DNA-binding peptide nanotweezers: an in-silico study.

Authors:  Gaurav Sharma; Kaushal Rege; David E Budil; Martin L Yarmush; Constantinos Mavroidis
Journal:  Int J Nanomedicine       Date:  2008
  3 in total

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