Literature DB >> 11297932

Steered molecular dynamics and mechanical functions of proteins.

B Isralewitz1, M Gao, K Schulten.   

Abstract

Atomic force microscopy of single molecules, steered molecular dynamics and the theory of stochastic processes have established a new field that investigates mechanical functions of proteins, such as ligand-receptor binding/unbinding and elasticity of muscle proteins during stretching. The combination of these methods yields information on the energy landscape that controls mechanical function and on the force-bearing components of proteins, as well as on the underlying physical mechanisms.

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Year:  2001        PMID: 11297932     DOI: 10.1016/s0959-440x(00)00194-9

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  260 in total

1.  Chair-boat transitions in single polysaccharide molecules observed with force-ramp AFM.

Authors:  Piotr E Marszalek; Hongbin Li; Andres F Oberhauser; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-26       Impact factor: 11.205

2.  Energetics of glycerol conduction through aquaglyceroporin GlpF.

Authors:  Morten Ø Jensen; Sanghyun Park; Emad Tajkhorshid; Klaus Schulten
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-07       Impact factor: 11.205

3.  Dissecting streptavidin-biotin interaction with a laminar flow chamber.

Authors:  Anne Pierres; Dominique Touchard; Anne-Marie Benoliel; Pierre Bongrand
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

4.  Forced detachment of the CD2-CD58 complex.

Authors:  M V Bayas; K Schulten; D Leckband
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

5.  Study, by use of coarse-grained models, of the functionally crucial residues and allosteric pathway of anesthetic regulation of the Gloeobacter violaceus ligand-gated ion channel.

Authors:  Xing Yuan Li; Fang Xie; Jing Chao Zhang; Ji Guo Su
Journal:  Eur Biophys J       Date:  2014-11-04       Impact factor: 1.733

6.  Pressure-induced water transport in membrane channels studied by molecular dynamics.

Authors:  Fangqiang Zhu; Emad Tajkhorshid; Klaus Schulten
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

7.  Analysis of functional motions in Brownian molecular machines with an efficient block normal mode approach: myosin-II and Ca2+ -ATPase.

Authors:  Guohui Li; Qiang Cui
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

8.  DNA unzipped under a constant force exhibits multiple metastable intermediates.

Authors:  Claudia Danilowicz; Vincent W Coljee; Cedric Bouzigues; David K Lubensky; David R Nelson; Mara Prentiss
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-06       Impact factor: 11.205

9.  Mechanisms of selectivity in channels and enzymes studied with interactive molecular dynamics.

Authors:  Paul Grayson; Emad Tajkhorshid; Klaus Schulten
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

10.  Molecular dynamics simulations of lipid nanodiscs.

Authors:  Mohsen Pourmousa; Richard W Pastor
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-05-03       Impact factor: 3.747

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