Literature DB >> 12123813

The 1.62 A structure of Thermoascus aurantiacus endoglucanase: completing the structural picture of subfamilies in glycoside hydrolase family 5.

Leila Lo Leggio1, Sine Larsen.   

Abstract

The crystal structure of Thermoascus aurantiacus endoglucanase (Cel5A), a family 5 glycoside hydrolase, has been determined to 1.62 A resolution by multiple isomorphous replacement with anomalous scattering. It is the first report of a structure in the subfamily to which Cel5A belongs. Cel5A consists solely of a catalytic module with compact eight-fold beta/alpha barrel architecture. The length of the tryptophan-rich substrate binding groove suggests the presence of substrate binding subsites -4 to +3. Structural comparison shows that two glycines are completely conserved in the family, in addition to the two catalytic glutamates and six other conserved residues previously identified. Gly 44 in particular is part of a type IV C-terminal helix capping motif, whose disruption is likely to affect the position of an essential conserved arginine. One aromatic residue (Trp 170 in Cel5A), not conserved in term of sequence, is nonetheless spatially conserved in the substrate binding groove. Its role might be to force the bend that occurs in the polysaccharide chain on binding, thus favoring substrate distortion at subsite -1.

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Year:  2002        PMID: 12123813     DOI: 10.1016/s0014-5793(02)02954-x

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  21 in total

1.  Three-dimensional structure of RBcel1, a metagenome-derived psychrotolerant family GH5 endoglucanase.

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2.  Biochemical characterization and structural analysis of a bifunctional cellulase/xylanase from Clostridium thermocellum.

Authors:  Shuo-Fu Yuan; Tzu-Hui Wu; Hsiao-Lin Lee; Han-Yu Hsieh; Wen-Ling Lin; Barbara Yang; Chih-Kang Chang; Qian Li; Jian Gao; Chun-Hsiang Huang; Meng-Chiao Ho; Rey-Ting Guo; Po-Huang Liang
Journal:  J Biol Chem       Date:  2015-01-09       Impact factor: 5.157

Review 3.  Genomics review of holocellulose deconstruction by aspergilli.

Authors:  Fernando Segato; André R L Damásio; Rosymar C de Lucas; Fabio M Squina; Rolf A Prade
Journal:  Microbiol Mol Biol Rev       Date:  2014-12       Impact factor: 11.056

4.  Function-based classification of carbohydrate-active enzymes by recognition of short, conserved peptide motifs.

Authors:  Peter Kamp Busk; Lene Lange
Journal:  Appl Environ Microbiol       Date:  2013-03-22       Impact factor: 4.792

5.  Proteomic and functional analysis of the cellulase system expressed by Postia placenta during brown rot of solid wood.

Authors:  Jae San Ryu; Semarjit Shary; Carl J Houtman; Ellen A Panisko; Premsagar Korripally; Franz J St John; Casey Crooks; Matti Siika-Aho; Jon K Magnuson; Kenneth E Hammel
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

6.  A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis.

Authors:  Evan M Glasgow; Elias I Kemna; Craig A Bingman; Nicole L Ing; Kai Deng; Christopher M Bianchetti; Taichi E Takasuka; Trent R Northen; Brian G Fox
Journal:  J Biol Chem       Date:  2020-10-16       Impact factor: 5.157

7.  Processive endoglucanases mediate degradation of cellulose by Saccharophagus degradans.

Authors:  Brian J Watson; Haitao Zhang; Atkinson G Longmire; Young Hwan Moon; Steven W Hutcheson
Journal:  J Bacteriol       Date:  2009-07-17       Impact factor: 3.490

8.  Structure, dynamics, and specificity of endoglucanase D from Clostridium cellulovorans.

Authors:  Christopher M Bianchetti; Phillip Brumm; Robert W Smith; Kevin Dyer; Greg L Hura; Thomas J Rutkoski; George N Phillips
Journal:  J Mol Biol       Date:  2013-06-08       Impact factor: 5.469

9.  A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis.

Authors:  Evan M Glasgow; Elias I Kemna; Craig A Bingman; Nicole Ing; Kai Deng; Christopher M Bianchetti; Taichi E Takasuka; Trent R Northen; Brian G Fox
Journal:  J Biol Chem       Date:  2020-12-18       Impact factor: 5.157

10.  Cloning and identification of novel hydrolase genes from a dairy cow rumen metagenomic library and characterization of a cellulase gene.

Authors:  Xia Gong; Robert J Gruninger; Meng Qi; Lyn Paterson; Robert J Forster; Ron M Teather; Tim A McAllister
Journal:  BMC Res Notes       Date:  2012-10-13
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