Literature DB >> 12117416

Control of eukaryotic protein synthesis by upstream open reading frames in the 5'-untranslated region of an mRNA.

Hedda A Meijer1, Adri A M Thomas.   

Abstract

Control of gene expression is achieved at various levels. Translational control becomes crucial in the absence of transcription, such as occurs in early developmental stages. One of the initiating events in translation is that the 40 S subunit of the ribosome binds the mRNA at the 5'-cap structure and scans the 5'-untranslated region (5'-UTR) for AUG initiation codons. AUG codons upstream of the main open reading frame can induce formation of a translation-competent ribosome that may translate and (i) terminate and re-initiate, (ii) terminate and leave the mRNA, resulting in down-regulation of translation of the main open reading frame, or (iii) synthesize an N-terminally extended protein. In the present review we discuss how upstream AUGs can control the expression of the main open reading frame, and a comparison is made with other elements in the 5'-UTR that control mRNA translation, such as hairpins and internal ribosome entry sites. Recent data indicate the flexibility of controlling translation initiation, and how the mode of ribosome entry on the mRNA as well as the elements in the 5'-UTR can accurately regulate the amount of protein synthesized from a specific mRNA.

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Year:  2002        PMID: 12117416      PMCID: PMC1222879          DOI: 10.1042/BJ20011706

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  79 in total

Review 1.  Initiation of translation in prokaryotes and eukaryotes.

Authors:  M Kozak
Journal:  Gene       Date:  1999-07-08       Impact factor: 3.688

Review 2.  Translational control by CPEB: a means to the end.

Authors:  R Mendez; J D Richter
Journal:  Nat Rev Mol Cell Biol       Date:  2001-07       Impact factor: 94.444

3.  Feedback inhibition of poly(A)-binding protein mRNA translation. A possible mechanism of translation arrest by stalled 40 S ribosomal subunits.

Authors:  J Bag
Journal:  J Biol Chem       Date:  2001-10-04       Impact factor: 5.157

4.  The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5' secondary structure.

Authors:  Y V Svitkin; A Pause; A Haghighat; S Pyronnet; G Witherell; G J Belsham; N Sonenberg
Journal:  RNA       Date:  2001-03       Impact factor: 4.942

5.  New isoforms of VEGF are translated from alternative initiation CUG codons located in its 5'UTR.

Authors:  M Meiron; R Anunu; E J Scheinman; S Hashmueli; B Z Levi
Journal:  Biochem Biophys Res Commun       Date:  2001-04-13       Impact factor: 3.575

6.  Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes.

Authors:  M Kozak
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

Review 7.  Molecular mechanisms of translation initiation in eukaryotes.

Authors:  T V Pestova; V G Kolupaeva; I B Lomakin; E V Pilipenko; I N Shatsky; V I Agol; C U Hellen
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-19       Impact factor: 11.205

8.  Block of HAC1 mRNA translation by long-range base pairing is released by cytoplasmic splicing upon induction of the unfolded protein response.

Authors:  U Rüegsegger; J H Leber; P Walter
Journal:  Cell       Date:  2001-10-05       Impact factor: 41.582

Review 9.  Regulation of translation initiation by FRAP/mTOR.

Authors:  A C Gingras; B Raught; N Sonenberg
Journal:  Genes Dev       Date:  2001-04-01       Impact factor: 11.361

10.  A short open reading frame terminating in front of a stable hairpin is the conserved feature in pregenomic RNA leaders of plant pararetroviruses.

Authors:  Mikhail M Pooggin; Johannes Fütterer; Konstantin G Skryabin; Thomas Hohn
Journal:  J Gen Virol       Date:  1999-08       Impact factor: 3.891

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  104 in total

1.  Translation repression by GLD-1 protects its mRNA targets from nonsense-mediated mRNA decay in C. elegans.

Authors:  Min-Ho Lee; Tim Schedl
Journal:  Genes Dev       Date:  2004-04-22       Impact factor: 11.361

2.  5'-untranslated regions with multiple upstream AUG codons can support low-level translation via leaky scanning and reinitiation.

Authors:  Xue-Qing Wang; Joseph A Rothnagel
Journal:  Nucleic Acids Res       Date:  2004-02-27       Impact factor: 16.971

3.  Lost in translation: translational interference from a recurrent mutation in exon 1 of MECP2.

Authors:  A Saxena; D de Lagarde; H Leonard; S L Williamson; V Vasudevan; J Christodoulou; E Thompson; P MacLeod; D Ravine
Journal:  J Med Genet       Date:  2005-09-09       Impact factor: 6.318

4.  Functional studies of the 5'-untranslated region of human 5-HT4 receptor mRNA.

Authors:  Marjorie Maillet; Monique Gastineau; Pascal Bochet; Marie-Liesse Asselin-Labat; Eric Morel; Jean-Noël Laverrière; Anne-Marie Lompré; Rodolphe Fischmeister; Frank Lezoualc'h
Journal:  Biochem J       Date:  2005-04-15       Impact factor: 3.857

5.  High frequency of alternative first exons in erythroid genes suggests a critical role in regulating gene function.

Authors:  Jeff S Tan; Narla Mohandas; John G Conboy
Journal:  Blood       Date:  2005-11-17       Impact factor: 22.113

6.  Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs.

Authors:  Masaaki Oyama; Chiharu Itagaki; Hiroko Hata; Yutaka Suzuki; Tomonori Izumi; Tohru Natsume; Toshiaki Isobe; Sumio Sugano
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

7.  The role of alternative translation start sites in the generation of human protein diversity.

Authors:  Alex V Kochetov; Akinori Sarai; Igor B Rogozin; Vladimir K Shumny; Nikolay A Kolchanov
Journal:  Mol Genet Genomics       Date:  2005-06-15       Impact factor: 3.291

8.  Expression of human Hemojuvelin (HJV) is tightly regulated by two upstream open reading frames in HJV mRNA that respond to iron overload in hepatic cells.

Authors:  Cláudia Onofre; Filipa Tomé; Cristina Barbosa; Ana Luísa Silva; Luísa Romão
Journal:  Mol Cell Biol       Date:  2015-02-09       Impact factor: 4.272

9.  Gene structure, alternate splicing, tissue distribution, cellular localization, and developmental expression pattern of mouse deubiquitinating enzyme isoforms Usp2-45 and Usp2-69.

Authors:  Natalia Gousseva; Rohan T Baker
Journal:  Gene Expr       Date:  2003

10.  Genomic organization of human arylamine N-acetyltransferase Type I reveals alternative promoters that generate different 5'-UTR splice variants with altered translational activities.

Authors:  Neville J Butcher; Ajanthy Arulpragasam; Hui Li Goh; Tamara Davey; Rodney F Minchin
Journal:  Biochem J       Date:  2005-04-01       Impact factor: 3.857

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