Literature DB >> 12111094

The URH1 uridine ribohydrolase of Saccharomyces cerevisiae.

Jean-Emmanuel Kurtz1, Françoise Exinger, Philippe Erbs, Richard Jund.   

Abstract

In the yeast Saccharomyces cerevisiae, uridine ribohydrolase activity is important for recycling, via the salvage pathway, pyrimidine deoxy- and ribonucleosides into uracil required for the growth of strains lacking the de novo pyrimidine synthesis pathway. We have shown that not only uridine and cytidine, but also 5-fluorouridine, 5-fluorocytidine and deoxycytidine are substrates for this enzyme. We identified, cloned and characterized the corresponding URH1 gene and its physiological function was determined by the measurement of metabolic fluxes in several mutants impaired in the pyrimidine salvage pathway. Sequence comparison revealed strong homology between Urh1p and the inosine/uridine-preferring nucleosidase and inosine/adenosine/guanosine nucleoside hydrolase proteins from the parasitic organisms Crithidia fasciculata and Trypanosoma brucei brucei. Moreover, the Asp and His residues in the putative active site were conserved. Site-directed mutagenesis demonstrated that the conserved His residue is involved in catalysis. These results allow us to speculate that the structure and catalytic mechanism of Urh1p are similar to the inosine/uridine nucleoside hydrolase from C. fasciculata.

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Year:  2002        PMID: 12111094     DOI: 10.1007/s00294-002-0296-9

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  16 in total

1.  Structural and biochemical characterization of the nucleoside hydrolase from C. elegans reveals the role of two active site cysteine residues in catalysis.

Authors:  Ranjan Kumar Singh; Jan Steyaert; Wim Versées
Journal:  Protein Sci       Date:  2017-03-06       Impact factor: 6.725

2.  Pyrimidine Salvage: Physiological Functions and Interaction with Chloroplast Biogenesis.

Authors:  Lisa Ohler; Sandra Niopek-Witz; Samuel E Mainguet; Torsten Möhlmann
Journal:  Plant Physiol       Date:  2019-05-17       Impact factor: 8.340

3.  Plastid uridine salvage activity is required for photoassimilate allocation and partitioning in Arabidopsis.

Authors:  Mingjie Chen; Jay J Thelen
Journal:  Plant Cell       Date:  2011-08-09       Impact factor: 11.277

4.  Analysis of Bacillus anthracis nucleoside hydrolase via in silico docking with inhibitors and molecular dynamics simulation.

Authors:  Ana P Guimarães; Aline A Oliveira; Elaine F F da Cunha; Teodorico C Ramalho; Tanos C C França
Journal:  J Mol Model       Date:  2011-02-12       Impact factor: 1.810

5.  Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae.

Authors:  Per O Ljungdahl; Bertrand Daignan-Fornier
Journal:  Genetics       Date:  2012-03       Impact factor: 4.562

6.  Nicotinamide Suppresses the DNA Damage Sensitivity of Saccharomyces cerevisiae Independently of Sirtuin Deacetylases.

Authors:  Anthony Rössl; Amanda Bentley-DeSousa; Yi-Chieh Tseng; Christine Nwosu; Michael Downey
Journal:  Genetics       Date:  2016-08-15       Impact factor: 4.562

7.  Uridine-ribohydrolase is a key regulator in the uridine degradation pathway of Arabidopsis.

Authors:  Benjamin Jung; Martin Flörchinger; Hans-Henning Kunz; Michaela Traub; Ruth Wartenberg; Wolfgang Jeblick; H Ekkehard Neuhaus; Torsten Möhlmann
Journal:  Plant Cell       Date:  2009-03-17       Impact factor: 11.277

8.  Active site plasticity revealed from the structure of the enterobacterial N-ribohydrolase RihA bound to a competitive inhibitor.

Authors:  Gianpiero Garau; Laura Muzzolini; Paola Tornaghi; Massimo Degano
Journal:  BMC Struct Biol       Date:  2010-06-08

9.  Identification of Isn1 and Sdt1 as glucose- and vitamin-regulated nicotinamide mononucleotide and nicotinic acid mononucleotide [corrected] 5'-nucleotidases responsible for production of nicotinamide riboside and nicotinic acid riboside.

Authors:  Katrina L Bogan; Charles Evans; Peter Belenky; Peng Song; Charles F Burant; Robert Kennedy; Charles Brenner
Journal:  J Biol Chem       Date:  2009-10-21       Impact factor: 5.157

10.  Diverse evolutionary mechanisms shape the type III effector virulence factor repertoire in the plant pathogen Pseudomonas syringae.

Authors:  Laurence Rohmer; David S Guttman; Jeffery L Dangl
Journal:  Genetics       Date:  2004-07       Impact factor: 4.562

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