Literature DB >> 12101097

Intranuclear degradation of nonsense codon-containing mRNA.

Marc Bühler1, Miles F Wilkinson, Oliver Mühlemann.   

Abstract

Most vertebrate mRNAs with premature termination codons (PTCs) are specifically recognized and degraded by a process referred to as nonsense-mediated mRNA decay (NMD) while still associated with the nucleus. However, it is still a matter of debate whether PTCs can be identified by intranuclear scanning or only by ribosomes on the cytoplasmic side of the nuclear envelope. Here we show that inhibition of mRNA export by two independent approaches does not affect the downregulation of PTC-containing T-cell receptor beta transcripts in the nuclear fraction of mammalian cells, providing strong evidence for intranuclear NMD. Our results are fully consistent with recently reported evidence for nuclear translation and suggest that an important biological role for nuclear ribosomes is the early elimination of nonsense mRNA during a pioneer round of translation.

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Year:  2002        PMID: 12101097      PMCID: PMC1084183          DOI: 10.1093/embo-reports/kvf129

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  39 in total

Review 1.  A perfect message: RNA surveillance and nonsense-mediated decay.

Authors:  M W Hentze; A E Kulozik
Journal:  Cell       Date:  1999-02-05       Impact factor: 41.582

2.  Matrix protein and another viral component contribute to induction of apoptosis in cells infected with vesicular stomatitis virus.

Authors:  S A Kopecky; M C Willingham; D S Lyles
Journal:  J Virol       Date:  2001-12       Impact factor: 5.103

Review 3.  Pre-mRNA processing: insights from nonsense.

Authors:  S Brogna
Journal:  Curr Biol       Date:  2001-10-16       Impact factor: 10.834

Review 4.  Curbing the nonsense: the activation and regulation of mRNA surveillance.

Authors:  C J Wilusz; W Wang; S W Peltz
Journal:  Genes Dev       Date:  2001-11-01       Impact factor: 11.361

5.  Binary specification of nonsense codons by splicing and cytoplasmic translation.

Authors:  R Thermann; G Neu-Yilik; A Deters; U Frede; K Wehr; C Hagemeier; M W Hentze; A E Kulozik
Journal:  EMBO J       Date:  1998-06-15       Impact factor: 11.598

6.  The DExH/D box protein HEL/UAP56 is essential for mRNA nuclear export in Drosophila.

Authors:  D Gatfield; H Le Hir; C Schmitt; I C Braun; T Köcher; M Wilm; E Izaurralde
Journal:  Curr Biol       Date:  2001-10-30       Impact factor: 10.834

7.  The DECD box putative ATPase Sub2p is an early mRNA export factor.

Authors:  T H Jensen; J Boulay; M Rosbash; D Libri
Journal:  Curr Biol       Date:  2001-10-30       Impact factor: 10.834

8.  Effect of vesicular stomatitis virus matrix protein on transcription directed by host RNA polymerases I, II, and III.

Authors:  M Ahmed; D S Lyles
Journal:  J Virol       Date:  1998-10       Impact factor: 5.103

9.  Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p.

Authors:  K Strässer; E Hurt
Journal:  Nature       Date:  2001-10-11       Impact factor: 49.962

10.  A conserved biogenesis pathway for nucleoporins: proteolytic processing of a 186-kilodalton precursor generates Nup98 and the novel nucleoporin, Nup96.

Authors:  B M Fontoura; G Blobel; M J Matunis
Journal:  J Cell Biol       Date:  1999-03-22       Impact factor: 10.539

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  22 in total

Review 1.  Nuclear translation: what is the evidence?

Authors:  James E Dahlberg; Elsebet Lund; Elizabeth B Goodwin
Journal:  RNA       Date:  2003-01       Impact factor: 4.942

2.  Nonsense-associated alternative splicing of T-cell receptor beta genes: no evidence for frame dependence.

Authors:  Fabio Mohn; Marc Bühler; Oliver Mühlemann
Journal:  RNA       Date:  2004-12-21       Impact factor: 4.942

3.  Expression of two novel alternatively spliced COL2A1 isoforms during chondrocyte differentiation.

Authors:  Audrey McAlinden; Brian Johnstone; John Kollar; Najam Kazmi; Thomas M Hering
Journal:  Matrix Biol       Date:  2007-10-18       Impact factor: 11.583

4.  Nonsense codons trigger an RNA partitioning shift.

Authors:  Angela D Bhalla; Jayanthi P Gudikote; Jun Wang; Wai-Kin Chan; Yao-Fu Chang; O Renee Olivas; Miles F Wilkinson
Journal:  J Biol Chem       Date:  2008-12-17       Impact factor: 5.157

5.  Temporal and spatial characterization of nonsense-mediated mRNA decay.

Authors:  Tatjana Trcek; Hanae Sato; Robert H Singer; Lynne E Maquat
Journal:  Genes Dev       Date:  2013-02-21       Impact factor: 11.361

6.  Exp5 exports eEF1A via tRNA from nuclei and synergizes with other transport pathways to confine translation to the cytoplasm.

Authors:  Markus T Bohnsack; Kathrin Regener; Blanche Schwappach; Rainer Saffrich; Efrosyni Paraskeva; Enno Hartmann; Dirk Görlich
Journal:  EMBO J       Date:  2002-11-15       Impact factor: 11.598

7.  Association of ribosomal proteins with nascent transcripts in S. cerevisiae.

Authors:  Patricia A Schroder; Melissa J Moore
Journal:  RNA       Date:  2005-10       Impact factor: 4.942

8.  Aberrant mRNA transcripts and the nonsense-mediated decay proteins UPF2 and UPF3 are enriched in the Arabidopsis nucleolus.

Authors:  Sang Hyon Kim; Olga A Koroleva; Dominika Lewandowska; Ali F Pendle; Gillian P Clark; Craig G Simpson; Peter J Shaw; John W S Brown
Journal:  Plant Cell       Date:  2009-07-14       Impact factor: 11.277

9.  A Hox gene mutation that triggers nonsense-mediated RNA decay and affects alternative splicing during Drosophila development.

Authors:  Claudio R Alonso; Michael Akam
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

10.  The eIF3 interactome reveals the translasome, a supercomplex linking protein synthesis and degradation machineries.

Authors:  Zhe Sha; Laurence M Brill; Rodrigo Cabrera; Oded Kleifeld; Judith S Scheliga; Michael H Glickman; Eric C Chang; Dieter A Wolf
Journal:  Mol Cell       Date:  2009-10-09       Impact factor: 17.970

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