Literature DB >> 12099889

The molecular mechanism for the spectral shifts between vertebrate ultraviolet- and violet-sensitive cone visual pigments.

Jill A Cowing1, Subathra Poopalasundaram, Susan E Wilkie, Phyllis R Robinson, James K Bowmaker, David M Hunt.   

Abstract

The short-wave-sensitive (SWS) visual pigments of vertebrate cone photoreceptors are divided into two classes on the basis of molecular identity, SWS1 and SWS2. Only the SWS1 class are present in mammals. The SWS1 pigments can be further subdivided into violet-sensitive (VS), with lambda(max) (the peak of maximal absorbance) values generally between 400 and 430 nm, and ultraviolet-sensitive (UVS), with a lambda(max)<380 nm. Phylogenetic evidence indicates that the ancestral pigment was UVS and that VS pigments have evolved separately from UVS pigments in the different vertebrate lineages. In this study, we have examined the mechanism of evolution of VS pigments in the mammalian lineage leading to present day ungulates (cow and pig). Amino acid sequence comparisons of the UVS pigments of teleost fish, amphibia, reptiles and rodents show that site 86 is invariably occupied by Phe but is replaced in bovine and porcine VS pigments by Tyr. Using site-directed mutagenesis of goldfish UVS opsin, we have shown that a Phe-86-->Tyr substitution is sufficient by itself to shift the lambda(max) of the goldfish pigment from a wild-type value of 360 nm to around 420 nm, and the reverse substitution of Tyr-86-Phe into bovine VS opsin produces a similar shift in the opposite direction. The substitution of this single amino acid is sufficient to account therefore for the evolution of bovine and porcine VS pigments. The replacement of Phe with polar Tyr at site 86 is consistent with the stabilization of Schiff-base protonation in VS pigments and the absence of protonation in UVS pigments.

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Year:  2002        PMID: 12099889      PMCID: PMC1222874          DOI: 10.1042/BJ20020483

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  34 in total

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2.  Mechanisms of spectral tuning in blue cone visual pigments. Visible and raman spectroscopy of blue-shifted rhodopsin mutants.

Authors:  S W Lin; G G Kochendoerfer; K S Carroll; D Wang; R A Mathies; T P Sakmar
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3.  SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling.

Authors:  N Guex; M C Peitsch
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4.  Regeneration of ultraviolet pigments of vertebrates.

Authors:  S Yokoyama; F B Radlwimmer; S Kawamura
Journal:  FEBS Lett       Date:  1998-02-20       Impact factor: 4.124

5.  Functional characterization of visual and nonvisual pigments of American chameleon (Anolis carolinensis).

Authors:  S Kawamura; S Yokoyama
Journal:  Vision Res       Date:  1998-01       Impact factor: 1.886

6.  The molecular basis for UV vision in birds: spectral characteristics, cDNA sequence and retinal localization of the UV-sensitive visual pigment of the budgerigar (Melopsittacus undulatus).

Authors:  S E Wilkie; P M Vissers; D Das; W J Degrip; J K Bowmaker; D M Hunt
Journal:  Biochem J       Date:  1998-02-15       Impact factor: 3.857

7.  Visual pigments and oil droplets from six classes of photoreceptor in the retinas of birds.

Authors:  J K Bowmaker; L A Heath; S E Wilkie; D M Hunt
Journal:  Vision Res       Date:  1997-08       Impact factor: 1.886

8.  Molecular cloning and localization of rhodopsin kinase in the mammalian pineal.

Authors:  X Zhao; F Haeseleer; R N Fariss; J Huang; W Baehr; A H Milam; K Palczewski
Journal:  Vis Neurosci       Date:  1997 Mar-Apr       Impact factor: 3.241

9.  Sequence and evolution of the blue cone pigment gene in Old and New World primates.

Authors:  D M Hunt; J A Cowing; R Patel; B Appukuttan; J K Bowmaker; J D Mollon
Journal:  Genomics       Date:  1995-06-10       Impact factor: 5.736

10.  Murine and bovine blue cone pigment genes: cloning and characterization of two new members of the S family of visual pigments.

Authors:  M I Chiu; D J Zack; Y Wang; J Nathans
Journal:  Genomics       Date:  1994-05-15       Impact factor: 5.736

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  33 in total

1.  Evolutionary analysis of rhodopsin and cone pigments: connecting the three-dimensional structure with spectral tuning and signal transfer.

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Journal:  FEBS Lett       Date:  2003-11-27       Impact factor: 4.124

2.  Salmonid opsin sequences undergo positive selection and indicate an alternate evolutionary relationship in oncorhynchus.

Authors:  Stephen G Dann; W Ted Allison; David B Levin; John S Taylor; Craig W Hawryshyn
Journal:  J Mol Evol       Date:  2004-04       Impact factor: 2.395

3.  Ultraviolet-sensitive vision in long-lived birds.

Authors:  Livia S Carvalho; Ben Knott; Mathew L Berg; Andrew T D Bennett; David M Hunt
Journal:  Proc Biol Sci       Date:  2010-07-28       Impact factor: 5.349

4.  Multiple Genetic Mechanisms Contribute to Visual Sensitivity Variation in the Labridae.

Authors:  Genevieve A C Phillips; Karen L Carleton; N Justin Marshall
Journal:  Mol Biol Evol       Date:  2015-10-12       Impact factor: 16.240

5.  Tertiary structure and spectral tuning of UV and violet pigments in vertebrates.

Authors:  Shozo Yokoyama; William T Starmer; Yusuke Takahashi; Takashi Tada
Journal:  Gene       Date:  2005-12-15       Impact factor: 3.688

6.  Rod and cone opsin families differ in spectral tuning domains but not signal transducing domains as judged by saturated evolutionary trace analysis.

Authors:  Karen L Carleton; Tyrone C Spady; Rick H Cote
Journal:  J Mol Evol       Date:  2005-06-16       Impact factor: 2.395

7.  How a small change in retinal leads to G-protein activation: initial events suggested by molecular dynamics calculations.

Authors:  Paul S Crozier; Mark J Stevens; Thomas B Woolf
Journal:  Proteins       Date:  2007-02-15

Review 8.  Evolution and spectral tuning of visual pigments in birds and mammals.

Authors:  David M Hunt; Livia S Carvalho; Jill A Cowing; Wayne L Davies
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2009-10-12       Impact factor: 6.237

9.  Evolutionary replacement of UV vision by violet vision in fish.

Authors:  Takashi Tada; Ahmet Altun; Shozo Yokoyama
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-28       Impact factor: 11.205

10.  Genetic basis of spectral tuning in the violet-sensitive visual pigment of African clawed frog, Xenopus laevis.

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Journal:  Genetics       Date:  2005-08-03       Impact factor: 4.562

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