Literature DB >> 12087176

Overlapping of MINK and CHRNE gene loci in the course of mammalian evolution.

Ippeita Dan1, Norinobu M Watanabe, Eriko Kajikawa, Takafumi Ishida, Akhilesh Pandey, Akihiro Kusumi.   

Abstract

Overlapping of genes, especially in an anti-parallel fashion, is quite rare in eukaryotic genomes. We have found a rare instance of exon overlapping involving CHRNE and MINK gene loci on chromosome 17 in humans. CHRNE codes for the epsilon subunit of the nicotinic acetylcholine receptor (AChRepsilon) whereas MINK encodes a serine/threonine kinase belonging to the GCK family. To elucidate the evolutionary trail of this gene overlapping event, we examined the genomes of a number of primates and found that mutations in the polyadenylation signal of the CHRNE gene in early hominoids led to the overlap. Upon extending this analysis to genomes of other orders of placental mammals, we observed that the overlapping occurred at least three times independently during the course of mammalian evolution. Because CHRNE and MINK are differentially expressed, the potentially hazardous mutations responsible for the exon overlap seem to have escaped evolutionary pressures by differential temporo-spatial expression of the two genes.

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Year:  2002        PMID: 12087176      PMCID: PMC117062          DOI: 10.1093/nar/gkf407

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  25 in total

1.  Molecular cloning of MINK, a novel member of mammalian GCK family kinases, which is up-regulated during postnatal mouse cerebral development.

Authors:  I Dan; N M Watanabe; T Kobayashi; K Yamashita-Suzuki; Y Fukagaya; E Kajikawa; W K Kimura; T M Nakashima; K Matsumoto; J Ninomiya-Tsuji; A Kusumi
Journal:  FEBS Lett       Date:  2000-03-03       Impact factor: 4.124

2.  Two overlapping reading frames in a single exon encode interacting proteins--a novel way of gene usage.

Authors:  M Klemke; R H Kehlenbach; W B Huttner
Journal:  EMBO J       Date:  2001-07-16       Impact factor: 11.598

3.  The Ste20 group kinases as regulators of MAP kinase cascades.

Authors:  I Dan; N M Watanabe; A Kusumi
Journal:  Trends Cell Biol       Date:  2001-05       Impact factor: 20.808

4.  The mitochondrial genome of the sperm whale and a new molecular reference for estimating eutherian divergence dates.

Authors:  U Arnason; A Gullberg; S Gretarsdottir; B Ursing; A Janke
Journal:  J Mol Evol       Date:  2000-06       Impact factor: 2.395

Review 5.  Do natural antisense transcripts make sense in eukaryotes?

Authors:  C Vanhée-Brossollet; C Vaquero
Journal:  Gene       Date:  1998-04-28       Impact factor: 3.688

6.  Resolution of the early placental mammal radiation using Bayesian phylogenetics.

Authors:  W J Murphy; E Eizirik; S J O'Brien; O Madsen; M Scally; C J Douady; E Teeling; O A Ryder; M J Stanhope; W W de Jong; M S Springer
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

7.  Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells.

Authors:  S M Elbashir; J Harborth; W Lendeckel; A Yalcin; K Weber; T Tuschl
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

8.  Parallel adaptive radiations in two major clades of placental mammals.

Authors:  O Madsen; M Scally; C J Douady; D J Kao; R W DeBry; R Adkins; H M Amrine; M J Stanhope; W W de Jong; M S Springer
Journal:  Nature       Date:  2001-02-01       Impact factor: 49.962

9.  Molecular phylogenetics and the origins of placental mammals.

Authors:  W J Murphy; E Eizirik; W E Johnson; Y P Zhang; O A Ryder; S J O'Brien
Journal:  Nature       Date:  2001-02-01       Impact factor: 49.962

10.  Molecular timing of primate divergences as estimated by two nonprimate calibration points.

Authors:  U Arnason; A Gullberg; A Janke
Journal:  J Mol Evol       Date:  1998-12       Impact factor: 2.395

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  7 in total

1.  Successful COG8 and PDF overlap is mediated by alterations in splicing and polyadenylation signals.

Authors:  Isabel Pereira-Castro; Rita Quental; Luís T da Costa; António Amorim; Luisa Azevedo
Journal:  Hum Genet       Date:  2011-07-30       Impact factor: 4.132

2.  Sense-antisense gene pairs: sequence, transcription, and structure are not conserved between human and mouse.

Authors:  Emily J Wood; Kwanrutai Chin-Inmanu; Hui Jia; Leonard Lipovich
Journal:  Front Genet       Date:  2013-09-26       Impact factor: 4.599

3.  Overlapping of genes in the human genome.

Authors:  Tomohiro Nakayama; Satoshi Asai; Yasuo Takahashi; Oto Maekawa; Yasuji Kasama
Journal:  Int J Biomed Sci       Date:  2007-03

4.  Birth and death of gene overlaps in vertebrates.

Authors:  Izabela Makałowska; Chiao-Feng Lin; Krisitina Hernandez
Journal:  BMC Evol Biol       Date:  2007-10-16       Impact factor: 3.260

5.  The gene structure and expression of human ABHD1: overlapping polyadenylation signal sequence with Sec12.

Authors:  Alasdair J Edgar
Journal:  BMC Genomics       Date:  2003-05-07       Impact factor: 3.969

6.  Overlapping genes in the human and mouse genomes.

Authors:  Chaitanya R Sanna; Wen-Hsiung Li; Liqing Zhang
Journal:  BMC Genomics       Date:  2008-04-14       Impact factor: 3.969

7.  Overlapping protein-coding genes in human genome and their coincidental expression in tissues.

Authors:  Chao-Hsin Chen; Chao-Yu Pan; Wen-Chang Lin
Journal:  Sci Rep       Date:  2019-09-16       Impact factor: 4.379

  7 in total

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