Literature DB >> 12082163

Thermodynamic characterization of variants of mesophilic cytochrome c and its thermophilic counterpart.

Susumu Uchiyama1, Jun Hasegawa, Yuko Tanimoto, Hiroshi Moriguchi, Masayuki Mizutani, Yasuo Igarashi, Yoshihiro Sambongi, Yuji Kobayashi.   

Abstract

Thermal stability was measured for variants of cytochrome c-551 (PA c-551) from a mesophile, Pseudomonas aeruginosa, and a thermophilic counterpart, Hydrogenobacter thermophilus cytochrome c-552 (HT c-552), by differential scanning calorimetry (DSC) at pH 3.6. The mutated residues in PA c-551, selected with reference to the corresponding residues in HT c-552, were located in three spatially separated regions: region I, Phe7 to Ala/Val13 to Met; region II, Glu34 to Tyr/Phe43 to Tyr; and region III, Val78 to Ile. The thermodynamic parameters determined indicated that the mutations in regions I and III caused enhanced stability through not only enthalpic but also entropic contributions, which reflected improved packing of the side chains. Meanwhile, the mutated region II made enthalpic contributions to the stability through electrostatic interactions. The obtained differences in the Gibbs free energy changes of unfolding [Delta(DeltaG)] showed that the three regions contributed to the overall stability in an additive manner. HT c-552 had the smallest heat capacity change (DeltaC(P)), resulting in higher DeltaG values over a wide temperature range (0-100 degrees C), compared to the PA c-551 variants; this contributed to the highest stability of HT c-552. Our DSC measurement results, in conjunction with mutagenesis and structural studies on the homologous mesophilic and thermophilic cytochromes c, provided an extended thermodynamic view of protein stabilization.

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Year:  2002        PMID: 12082163     DOI: 10.1093/protein/15.6.455

Source DB:  PubMed          Journal:  Protein Eng        ISSN: 0269-2139


  8 in total

1.  Effects of axial methionine coordination on the in-plane asymmetry of the heme electronic structure of cytochrome c.

Authors:  Naoki Tachiiri; Hikaru Hemmi; Shin-Ichi Joseph Takayama; Hajime Mita; Jun Hasegawa; Yoshihiro Sambongi; Yasuhiko Yamamoto
Journal:  J Biol Inorg Chem       Date:  2004-07-03       Impact factor: 3.358

2.  Cloning, expression, crystallization and preliminary X-ray characterization of cytochrome c552 from a moderate thermophilic bacterium, Hydrogenophilus thermoluteolus.

Authors:  Shin-ichi Ichiki; Shota Nakamura; Tadayasu Ohkubo; Yuji Kobayashi; Jun Hasegawa; Susumu Uchiyama; Hirofumi Nishihara; Keiko Mizuta; Yoshihiro Sambongi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-03-24

3.  Roles of a short connecting disulfide bond in the stability and function of psychrophilic Shewanella violacea cytochrome c (5).

Authors:  Keiko Ogawa; Takafumi Sonoyama; Taku Takeda; Shin-Ichi Ichiki; Shota Nakamura; Yuji Kobayashi; Susumu Uchiyama; Kaoru Nakasone; Shin-Ichi J Takayama; Hajime Mita; Yasuhiko Yamamoto; Yoshihiro Sambongi
Journal:  Extremophiles       Date:  2007-07-27       Impact factor: 2.395

4.  Effects of ionic strength and sugars on the aggregation propensity of monoclonal antibodies: influence of colloidal and conformational stabilities.

Authors:  Shuntaro Saito; Jun Hasegawa; Naoki Kobayashi; Toshiaki Tomitsuka; Susumu Uchiyama; Kiichi Fukui
Journal:  Pharm Res       Date:  2013-01-15       Impact factor: 4.200

5.  Correlation between the optimal growth pressures of four Shewanella species and the stabilities of their cytochromes c 5.

Authors:  Misa Masanari; Satoshi Wakai; Manabu Ishida; Chiaki Kato; Yoshihiro Sambongi
Journal:  Extremophiles       Date:  2014-04-04       Impact factor: 2.395

6.  Stabilizing salt-bridge enhances protein thermostability by reducing the heat capacity change of unfolding.

Authors:  Chi-Ho Chan; Tsz-Ha Yu; Kam-Bo Wong
Journal:  PLoS One       Date:  2011-06-24       Impact factor: 3.240

7.  Comparison of the backbone dynamics of wild-type Hydrogenobacter thermophilus cytochrome c(552) and its b-type variant.

Authors:  Kaeko Tozawa; Stuart J Ferguson; Christina Redfield; Lorna J Smith
Journal:  J Biomol NMR       Date:  2015-05-08       Impact factor: 2.835

8.  Domain swapping oligomerization of thermostable c-type cytochrome in E. coli cells.

Authors:  Yugo Hayashi; Masaru Yamanaka; Satoshi Nagao; Hirofumi Komori; Yoshiki Higuchi; Shun Hirota
Journal:  Sci Rep       Date:  2016-02-03       Impact factor: 4.379

  8 in total

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