Literature DB >> 12081470

Multiple conformational changes in enzyme catalysis.

Gordon G Hammes1.   

Abstract

Understanding the molecular mechanisms of enzyme catalysis and allosteric regulation has been a primary goal of biochemistry for many years. The dynamics of these processes, approached through a variety of kinetic methods, are discussed. The results obtained for many different enzymes suggest that multiple intermediates and conformations are general characteristics of the catalytic process and allosteric regulation. Ribonuclease, dihydrofolate reductase, chymotrypsin, aspartate aminotransferase, and aspartate transcarbamoylase are considered as specific examples. Typical and maximum rates of conformational changes and catalysis are also discussed, based on results obtained from model systems. The nature and rates of interconversion of the intermediates, along with structural information, can be used as the bases for understanding the incredible catalytic efficiency of enzymes. Potential roles of conformational changes in the catalytic process are discussed in terms of static and environmental effects, and in terms of dynamic coupling within the enzyme-substrate complex.

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Year:  2002        PMID: 12081470     DOI: 10.1021/bi0260839

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  83 in total

1.  An enzymatic molten globule: efficient coupling of folding and catalysis.

Authors:  Katherina Vamvaca; Beat Vögeli; Peter Kast; Konstantin Pervushin; Donald Hilvert
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-20       Impact factor: 11.205

2.  Interrogating the activities of conformational deformed enzyme by single-molecule fluorescence-magnetic tweezers microscopy.

Authors:  Qing Guo; Yufan He; H Peter Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-28       Impact factor: 11.205

3.  Substrate Binding Specifically Modulates Domain Arrangements in Adenylate Kinase.

Authors:  Fabian Zeller; Martin Zacharias
Journal:  Biophys J       Date:  2015-11-03       Impact factor: 4.033

4.  Dynamics connect substrate recognition to catalysis in protein kinase A.

Authors:  Larry R Masterson; Cecilia Cheng; Tao Yu; Marco Tonelli; Alexandr Kornev; Susan S Taylor; Gianluigi Veglia
Journal:  Nat Chem Biol       Date:  2010-10-03       Impact factor: 15.040

Review 5.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

6.  Local encoding of computationally designed enzyme activity.

Authors:  Malin Allert; Mary A Dwyer; Homme W Hellinga
Journal:  J Mol Biol       Date:  2006-12-05       Impact factor: 5.469

7.  Using empirical phase diagrams to understand the role of intramolecular dynamics in immunoglobulin G stability.

Authors:  Joshua D Ramsey; Michelle L Gill; Tim J Kamerzell; E Shane Price; Sangeeta B Joshi; Steven M Bishop; Cynthia N Oliver; C Russell Middaugh
Journal:  J Pharm Sci       Date:  2009-07       Impact factor: 3.534

8.  Computational identification of slow conformational fluctuations in proteins.

Authors:  Arvind Ramanathan; Pratul K Agarwal
Journal:  J Phys Chem B       Date:  2009-12-31       Impact factor: 2.991

9.  Large scale dynamics of the Michaelis complex in Bacillus stearothermophilus lactate dehydrogenase revealed by a single-tryptophan mutant study.

Authors:  Beining Nie; Hua Deng; Ruel Desamero; Robert Callender
Journal:  Biochemistry       Date:  2013-03-07       Impact factor: 3.162

Review 10.  Using NMR spectroscopy to elucidate the role of molecular motions in enzyme function.

Authors:  George P Lisi; J Patrick Loria
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-12-07       Impact factor: 9.795

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