Literature DB >> 12067651

Blockers and barriers to transcription: competing activities?

Masaya Oki1, Rohinton T Kamakaka.   

Abstract

In the eukaryotic cell active and inactive genes reside adjacent to one another and are modulated by numerous regulatory elements. Insulator elements prevent the misregulation of adjacent genes by restricting the effects of the regulatory elements to specific domains. Enhancer blockers prevent enhancers from inadvertently activating neighboring genes, and recent results suggest that they might function by a conserved mechanism across species. These elements appear to disrupt enhancer-promoter "communications" by interacting with the regulatory elements and sequestering these elements into specific regions of the nucleus thus rendering them non-functional. Barrier elements insulate active genes from neighboring heterochromatin and recent results suggest that they function by specific localized recruitment of acetyltransferases that antagonize the spread of heterochromatin-associated deacetylases, thus preventing the propagation of heterochromatin.

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Year:  2002        PMID: 12067651     DOI: 10.1016/s0955-0674(02)00327-7

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  25 in total

1.  The c-myc insulator element and matrix attachment regions define the c-myc chromosomal domain.

Authors:  Wendy M Gombert; Stephen D Farris; Eric D Rubio; Kristin M Morey-Rosler; William H Schubach; Anton Krumm
Journal:  Mol Cell Biol       Date:  2003-12       Impact factor: 4.272

Review 2.  Computational approaches to identify promoters and cis-regulatory elements in plant genomes.

Authors:  Stephane Rombauts; Kobe Florquin; Magali Lescot; Kathleen Marchal; Pierre Rouzé; Yves van de Peer
Journal:  Plant Physiol       Date:  2003-07       Impact factor: 8.340

3.  Barrier proteins remodel and modify chromatin to restrict silenced domains.

Authors:  Masaya Oki; Lourdes Valenzuela; Tomoko Chiba; Takashi Ito; Rohinton T Kamakaka
Journal:  Mol Cell Biol       Date:  2004-03       Impact factor: 4.272

4.  Mechanism of chromosomal boundary action: roadblock, sink, or loop?

Authors:  Daryl Gohl; Tsutomu Aoki; Jason Blanton; Greg Shanower; Gretchen Kappes; Paul Schedl
Journal:  Genetics       Date:  2010-12-31       Impact factor: 4.562

5.  Drosophila Su(Hw) insulator can stimulate transcription of a weakened yellow promoter over a distance.

Authors:  Anton Golovnin; Elena Melnick; Alexander Mazur; Pavel Georgiev
Journal:  Genetics       Date:  2004-11-01       Impact factor: 4.562

6.  Mutations in the nucleosome core enhance transcriptional silencing.

Authors:  Eugenia Y Xu; Xin Bi; Michael J Holland; Daniel E Gottschling; James R Broach
Journal:  Mol Cell Biol       Date:  2005-03       Impact factor: 4.272

7.  The Mcp element from the bithorax complex contains an insulator that is capable of pairwise interactions and can facilitate enhancer-promoter communication.

Authors:  Natalia Gruzdeva; Olga Kyrchanova; Alexander Parshikov; Andrey Kullyev; Pavel Georgiev
Journal:  Mol Cell Biol       Date:  2005-05       Impact factor: 4.272

8.  Study of long-distance functional interactions between Su(Hw) insulators that can regulate enhancer-promoter communication in Drosophila melanogaster.

Authors:  Ekaterina Savitskaya; Larisa Melnikova; Margarita Kostuchenko; Elena Kravchenko; Ekaterina Pomerantseva; Tatiana Boikova; Darya Chetverina; Aleksander Parshikov; Polyna Zobacheva; Elena Gracheva; Alexander Galkin; Pavel Georgiev
Journal:  Mol Cell Biol       Date:  2006-02       Impact factor: 4.272

9.  Study of the functional interaction between Mcp insulators from the Drosophila bithorax complex: effects of insulator pairing on enhancer-promoter communication.

Authors:  Olga Kyrchanova; Stepan Toshchakov; Alexander Parshikov; Pavel Georgiev
Journal:  Mol Cell Biol       Date:  2007-02-05       Impact factor: 4.272

10.  T-DNA insertional mutagenesis for activation tagging in rice.

Authors:  Dong-Hoon Jeong; Suyoung An; Hong-Gyu Kang; Sunok Moon; Jong-Jin Han; Sunhee Park; Hyun Sook Lee; Kyungsook An; Gynheung An
Journal:  Plant Physiol       Date:  2002-12       Impact factor: 8.340

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