Literature DB >> 12065432

Instability of the human minisatellite CEB1 in rad27Delta and dna2-1 replication-deficient yeast cells.

Judith Lopes1, Hélène Debrauwère, Jérôme Buard, Alain Nicolas.   

Abstract

Convergent studies in human and yeast model systems have shown that some minisatellite loci are relatively stable in somatic cells but not in the germline, and little is known about the mechanism(s) that can destabilize them. Unlike microsatellite sequences, mini satellites are not destabilized by mismatch repair mutations. We report here that the absence of Rad27 and Dna2 functions but not RNase H(35) or Exo1, which play an essential role in the processing of Okazaki fragments during replication, destabilize the human minisatellite CEB1 in mitotically growing Saccharomyces cerevisiae cells, up to 14% per generation in rad27Delta cells. Analysis using minisatellite variant repeat mapping by polymerase chain reaction of the internal structure of 17 variants reveals that the majority of rearrangements in rad27Delta cells are extremely complex contraction events that contain deletions, often accompanied by duplications of motif unit. Altogether, these results suggest that the improperly processed 5' flap structures that accumulate when replication is impaired can act as a potent stimulator of minisatellite destabilization and can provoke an unexpectedly broad range of mutagenic events. This replication-dependent phenomenon differs from the recombination-induced instability in yeast meiotic cells.

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Year:  2002        PMID: 12065432      PMCID: PMC125388          DOI: 10.1093/emboj/cdf310

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  39 in total

Review 1.  Clinical and molecular advances in autosomal dominant cerebellar ataxias: from genotype to phenotype and physiopathology.

Authors:  G Stevanin; A Dürr; A Brice
Journal:  Eur J Hum Genet       Date:  2000-01       Impact factor: 4.246

2.  Meiotic recombination and flanking marker exchange at the highly unstable human minisatellite CEB1 (D2S90).

Authors:  J Buard; A C Shone; A J Jeffreys
Journal:  Am J Hum Genet       Date:  2000-06-26       Impact factor: 11.025

Review 3.  Minisatellites: mutability and genome architecture.

Authors:  G Vergnaud; F Denoeud
Journal:  Genome Res       Date:  2000-07       Impact factor: 9.043

4.  Minisatellite variant repeat (MVR) mapping: analysis of 'null' repeat units at D1S8.

Authors:  K Tamaki; D G Monckton; A MacLeod; D L Neil; M Allen; A J Jeffreys
Journal:  Hum Mol Genet       Date:  1992-09       Impact factor: 6.150

5.  Repeat unit sequence variation in minisatellites: a novel source of DNA polymorphism for studying variation and mutation by single molecule analysis.

Authors:  A J Jeffreys; R Neumann; V Wilson
Journal:  Cell       Date:  1990-02-09       Impact factor: 41.582

6.  RPA governs endonuclease switching during processing of Okazaki fragments in eukaryotes.

Authors:  S H Bae; K H Bae; J A Kim; Y S Seo
Journal:  Nature       Date:  2001-07-26       Impact factor: 49.962

7.  Links between replication and recombination in Saccharomyces cerevisiae: a hypersensitive requirement for homologous recombination in the absence of Rad27 activity.

Authors:  H Debrauwère; S Loeillet; W Lin; J Lopes; A Nicolas
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

8.  Somatic versus germline mutation processes at minisatellite CEB1 (D2S90) in humans and transgenic mice.

Authors:  J Buard; A Collick; J Brown; A J Jeffreys
Journal:  Genomics       Date:  2000-04-15       Impact factor: 5.736

9.  Characterization of the enzymatic properties of the yeast dna2 Helicase/endonuclease suggests a new model for Okazaki fragment processing.

Authors:  S H Bae; Y S Seo
Journal:  J Biol Chem       Date:  2000-12-01       Impact factor: 5.157

10.  An association between the risk of cancer and mutations in the HRAS1 minisatellite locus.

Authors:  T G Krontiris; B Devlin; D D Karp; N J Robert; N Risch
Journal:  N Engl J Med       Date:  1993-08-19       Impact factor: 91.245

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  26 in total

1.  Minisatellite alterations in ZRT1 mutants occur via RAD52-dependent and RAD52-independent mechanisms in quiescent stationary phase yeast cells.

Authors:  Maire K Kelly; Bonnie Alver; David T Kirkpatrick
Journal:  DNA Repair (Amst)       Date:  2011-04-22

Review 2.  Comparative genomics and molecular dynamics of DNA repeats in eukaryotes.

Authors:  Guy-Franck Richard; Alix Kerrest; Bernard Dujon
Journal:  Microbiol Mol Biol Rev       Date:  2008-12       Impact factor: 11.056

3.  Zinc regulates the stability of repetitive minisatellite DNA tracts during stationary phase.

Authors:  Maire K Kelly; Peter A Jauert; Linnea E Jensen; Christine L Chan; Chinh S Truong; David T Kirkpatrick
Journal:  Genetics       Date:  2007-12       Impact factor: 4.562

4.  Complex minisatellite rearrangements generated in the total or partial absence of Rad27/hFEN1 activity occur in a single generation and are Rad51 and Rad52 dependent.

Authors:  Judith Lopes; Cyril Ribeyre; Alain Nicolas
Journal:  Mol Cell Biol       Date:  2006-09       Impact factor: 4.272

5.  Saccharomyces cerevisiae flap endonuclease 1 uses flap equilibration to maintain triplet repeat stability.

Authors:  Yuan Liu; Haihua Zhang; Janaki Veeraraghavan; Robert A Bambara; Catherine H Freudenreich
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

Review 6.  Flap endonuclease 1.

Authors:  Lata Balakrishnan; Robert A Bambara
Journal:  Annu Rev Biochem       Date:  2013-02-28       Impact factor: 23.643

7.  The yeast Pif1 helicase prevents genomic instability caused by G-quadruplex-forming CEB1 sequences in vivo.

Authors:  Cyril Ribeyre; Judith Lopes; Jean-Baptiste Boulé; Aurèle Piazza; Aurore Guédin; Virginia A Zakian; Jean-Louis Mergny; Alain Nicolas
Journal:  PLoS Genet       Date:  2009-05-08       Impact factor: 5.917

8.  Distinct activities of exonuclease 1 and flap endonuclease 1 at telomeric g4 DNA.

Authors:  Aarthy C Vallur; Nancy Maizels
Journal:  PLoS One       Date:  2010-01-26       Impact factor: 3.240

9.  Genetic instability triggered by G-quadruplex interacting Phen-DC compounds in Saccharomyces cerevisiae.

Authors:  Aurèle Piazza; Jean-Baptiste Boulé; Judith Lopes; Katie Mingo; Eric Largy; Marie-Paule Teulade-Fichou; Alain Nicolas
Journal:  Nucleic Acids Res       Date:  2010-03-11       Impact factor: 16.971

10.  Mutations in yeast replication proteins that increase CAG/CTG expansions also increase repeat fragility.

Authors:  Julie L Callahan; Kenneth J Andrews; Virginia A Zakian; Catherine H Freudenreich
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

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