Literature DB >> 12065401

Crystal structure of auxin-binding protein 1 in complex with auxin.

Eui-Jeon Woo1, Jacqueline Marshall, James Bauly, Jin-Gui Chen, Michael Venis, Richard M Napier, Richard W Pickersgill.   

Abstract

The structure of auxin-binding protein 1 (ABP1) from maize has been determined at 1.9 A resolution, revealing its auxin-binding site. The structure confirms that ABP1 belongs to the ancient and functionally diverse germin/seed storage 7S protein superfamily. The binding pocket of ABP1 is predominantly hydrophobic with a metal ion deep inside the pocket coordinated by three histidines and a glutamate. Auxin binds within this pocket, with its carboxylate binding the zinc and its aromatic ring binding hydrophobic residues including Trp151. There is a single disulfide between Cys2 and Cys155. No conformational rearrangement of ABP1 was observed when auxin bound to the protein in the crystal, but examination of the structure reveals a possible mechanism of signal transduction.

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Year:  2002        PMID: 12065401      PMCID: PMC126050          DOI: 10.1093/emboj/cdf291

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  36 in total

1.  wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models.

Authors:  A Perrakis; T K Sixma; K S Wilson; V S Lamzin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-07-01

2.  Miscellaneous algorithms for density modification.

Authors:  K Cowtan; P Main
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-07-01

3.  Microbial relatives of seed storage proteins: conservation of motifs in a functionally diverse superfamily of enzymes

Authors: 
Journal:  J Mol Evol       Date:  1998-02       Impact factor: 2.395

4.  The auxin signal for protoplast swelling is perceived by extracellular ABP1.

Authors:  B Steffens; C Feckler; K Palme; M Christian; M Böttger; H Lüthen
Journal:  Plant J       Date:  2001-09       Impact factor: 6.417

5.  Modelling of auxin-binding protein 1 suggests that its C-terminus and auxin could compete for a binding site that incorporates a metal ion and tryptophan residue 44.

Authors:  J Warwicker
Journal:  Planta       Date:  2001-02       Impact factor: 4.116

6.  Structure of phaseolin at 2.2 A resolution. Implications for a common vicilin/legumin structure and the genetic engineering of seed storage proteins.

Authors:  M C Lawrence; T Izard; M Beuchat; R J Blagrove; P M Colman
Journal:  J Mol Biol       Date:  1994-05-20       Impact factor: 5.469

7.  Monoclonal antibodies detect an auxin-induced conformational change in the maize auxin-binding protein.

Authors:  R M Napier; M A Venis
Journal:  Planta       Date:  1990-09       Impact factor: 4.116

8.  Auxin-dependent cell expansion mediated by overexpressed auxin-binding protein 1.

Authors:  A M Jones; K H Im; M A Savka; M J Wu; N G DeWitt; R Shillito; A N Binns
Journal:  Science       Date:  1998-11-06       Impact factor: 47.728

9.  Modulation of K+ channels in Vicia stomatal guard cells by peptide homologs to the auxin-binding protein C terminus.

Authors:  G Thiel; M R Blatt; M D Fricker; I R White; P Millner
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-15       Impact factor: 11.205

10.  Auxin-binding protein from coleoptile membranes of corn (Zea mays L.). I. Purification by immunological methods and characterization.

Authors:  M Löbler; D Klämbt
Journal:  J Biol Chem       Date:  1985-08-15       Impact factor: 5.157

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  56 in total

1.  Cotton fiber germin-like protein. I. Molecular cloning and gene expression.

Authors:  Hee Jin Kim; Barbara A Triplett
Journal:  Planta       Date:  2003-11-25       Impact factor: 4.116

2.  Molecular characterization and spatial expression of the sunflower ABP1 gene.

Authors:  Clément Thomas; Denise Meyer; Michel Wolff; Christophe Himber; Malek Alioua; André Steinmetz
Journal:  Plant Mol Biol       Date:  2003-07       Impact factor: 4.076

3.  Expression of auxin-binding protein1 during plum fruit ontogeny supports the potential role of auxin in initiating and enhancing climacteric ripening.

Authors:  I El-Sharkawy; S Sherif; A Mahboob; K Abubaker; M Bouzayen; S Jayasankar
Journal:  Plant Cell Rep       Date:  2012-06-28       Impact factor: 4.570

4.  The auxin-like activity of humic substances is related to membrane interactions in carrot cell cultures.

Authors:  A Muscolo; M Sidari; O Francioso; V Tugnoli; S Nardi
Journal:  J Chem Ecol       Date:  2007-01       Impact factor: 2.626

5.  Crystal structure of the YML079w protein from Saccharomyces cerevisiae reveals a new sequence family of the jelly-roll fold.

Authors:  Cong-Zhao Zhou; Philippe Meyer; Sophie Quevillon-Cheruel; Inès Li De La Sierra-Gallay; Bruno Collinet; Marc Graille; Karine Blondeau; Jean-Marie François; Nicolas Leulliot; Isabelle Sorel; Anne Poupon; Joel Janin; Herman Van Tilbeurgh
Journal:  Protein Sci       Date:  2005-01       Impact factor: 6.725

6.  Crystal structure of the bacterial YhcH protein indicates a role in sialic acid catabolism.

Authors:  Alexey Teplyakov; Galina Obmolova; John Toedt; Michael Y Galperin; Gary L Gilliland
Journal:  J Bacteriol       Date:  2005-08       Impact factor: 3.490

Review 7.  Auxin dynamics: the dazzling complexity of a small molecule's message.

Authors:  Carolin Delker; Anja Raschke; Marcel Quint
Journal:  Planta       Date:  2008-02-26       Impact factor: 4.116

8.  Auxin binding protein 1 (ABP1) is not required for either auxin signaling or Arabidopsis development.

Authors:  Yangbin Gao; Yi Zhang; Da Zhang; Xinhua Dai; Mark Estelle; Yunde Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

9.  Mechanism of auxin interaction with Auxin Binding Protein (ABP1): a molecular dynamics simulation study.

Authors:  Branimir Bertosa; Biserka Kojić-Prodić; Rebecca C Wade; Sanja Tomić
Journal:  Biophys J       Date:  2007-08-31       Impact factor: 4.033

10.  Protoplast Swelling and Hypocotyl Growth Depend on Different Auxin Signaling Pathways.

Authors:  Renate I Dahlke; Simon Fraas; Kristian K Ullrich; Kirka Heinemann; Maren Romeiks; Thomas Rickmeyer; Gerhard Klebe; Klaus Palme; Hartwig Lüthen; Bianka Steffens
Journal:  Plant Physiol       Date:  2017-08-31       Impact factor: 8.340

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