Literature DB >> 12057201

A hyperthermostable D-ribose-5-phosphate isomerase from Pyrococcus horikoshii characterization and three-dimensional structure.

Kazuhiko Ishikawa1, Ikuo Matsui, Francoise Payan, Christian Cambillau, Hiroyasu Ishida, Yutaka Kawarabayasi, Hisasi Kikuchi, Alain Roussel.   

Abstract

A gene homologous to D-ribose-5-phosphate isomerase (EC 5.3.1.6) was found in the genome of Pyrococcus horikoshii. D-ribose-5-phosphate isomerase (PRI) is of particular metabolic importance since it catalyzes the interconversion between the ribose and ribulose forms involved in the pentose phosphate cycle and in the process of photosynthesis. The gene consisting of 687 bp was overexpressed in Escherichia coli, and the resulting enzyme showed activity at high temperatures with an optimum over 90 degrees C. The crystal structures of the enzyme, free and in complex with D-4-phosphoerythronic acid inhibitor, were determined. PRI is a tetramer in the crystal and in solution, and each monomer has a new fold consisting of two alpha/beta domains. The 3D structures and the characterization of different mutants indicate a direct or indirect catalytic role for the residues E107, D85, and K98.

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Year:  2002        PMID: 12057201     DOI: 10.1016/s0969-2126(02)00779-7

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  14 in total

1.  Structure of Escherichia coli ribose-5-phosphate isomerase: a ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle.

Authors:  Rong guang Zhang; C Evalena Andersson; Alexei Savchenko; Tatiana Skarina; Elena Evdokimova; Steven Beasley; Cheryl H Arrowsmith; Aled M Edwards; Andrzej Joachimiak; Sherry L Mowbray
Journal:  Structure       Date:  2003-01       Impact factor: 5.006

2.  Preliminary crystallographic analysis of two hypothetical ribose-5-phosphate isomerases from Streptococcus mutans.

Authors:  Chen Wang; Xuexin Fan; Xiaofang Cao; Xiang Liu; Lanfen Li; Xiaodong Su
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-04-21

3.  Transaldolase of Methanocaldococcus jannaschii.

Authors:  Tim Soderberg; Robert C Alver
Journal:  Archaea       Date:  2004-10       Impact factor: 3.273

4.  The structure of an archaeal ribose-5-phosphate isomerase from Methanocaldococcus jannaschii (MJ1603).

Authors:  Richard W Strange; Svetlana V Antonyuk; Mark J Ellis; Yoshitaka Bessho; Seiki Kuramitsu; Shigeyuki Yokoyama; S Samar Hasnain
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-11-27

5.  Structure of ribose 5-phosphate isomerase from the probiotic bacterium Lactobacillus salivarius UCC118.

Authors:  Carina M C Lobley; Pierre Aller; Alice Douangamath; Yamini Reddivari; Mario Bumann; Louise E Bird; Joanne E Nettleship; Jose Brandao-Neto; Raymond J Owens; Paul W O'Toole; Martin A Walsh
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-11-14

6.  Structure of ribose 5-phosphate isomerase from Plasmodium falciparum.

Authors:  Margaret A Holmes; Frederick S Buckner; Wesley C Van Voorhis; Christophe L M J Verlinde; Christopher Mehlin; Erica Boni; George DeTitta; Joseph Luft; Angela Lauricella; Lori Anderson; Oleksandr Kalyuzhniy; Frank Zucker; Lori W Schoenfeld; Thomas N Earnest; Wim G J Hol; Ethan A Merritt
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-04-12

7.  Detection of subgenome bias using an anchored syntenic approach in Eleusine coracana (finger millet).

Authors:  Nathan D Hall; Jinesh D Patel; J Scott McElroy; Leslie R Goertzen
Journal:  BMC Genomics       Date:  2021-03-12       Impact factor: 3.969

Review 8.  Carbohydrate metabolism in Archaea: current insights into unusual enzymes and pathways and their regulation.

Authors:  Christopher Bräsen; Dominik Esser; Bernadette Rauch; Bettina Siebers
Journal:  Microbiol Mol Biol Rev       Date:  2014-03       Impact factor: 11.056

9.  The 2.2 A resolution structure of RpiB/AlsB from Escherichia coli illustrates a new approach to the ribose-5-phosphate isomerase reaction.

Authors:  Rong-Guang Zhang; C Evalena Andersson; Tatiana Skarina; Elena Evdokimova; Aled M Edwards; Andrzej Joachimiak; Alexei Savchenko; Sherry L Mowbray
Journal:  J Mol Biol       Date:  2003-10-03       Impact factor: 5.469

10.  Concerted proton transfer mechanism of Clostridium thermocellum ribose-5-phosphate isomerase.

Authors:  Jun Wang; Weitao Yang
Journal:  J Phys Chem B       Date:  2013-08-02       Impact factor: 2.991

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