Literature DB >> 12054827

Water contributes actively to the rapid crossing of a protein unfolding barrier.

Maik H Jacob1, Christophe Saudan, Georg Holtermann, Andreas Martin, Dieter Perl, André E Merbach, Franz X Schmid.   

Abstract

The cold-shock protein CspB folds rapidly in a N <= => U two-state reaction via a transition state that is about 90% native in its interactions with denaturants and water. This suggested that the energy barrier to unfolding is overcome by processes occurring in the protein itself, rather than in the solvent. Nevertheless, CspB unfolding depends on the solvent viscosity. We determined the activation volumes of unfolding and refolding by pressure-jump and high-pressure stopped-flow techniques in the presence of various denaturants. The results obtained by these methods agree well. The activation volume of unfolding is positive (Delta V(++)(NU)=16(+/-4) ml/mol) and virtually independent of the nature and the concentration of the denaturant. We suggest that in the transition state the protein is expanded and water molecules start to invade the hydrophobic core. They have, however, not yet established favorable interactions to compensate for the loss of intra-protein interactions. The activation volume of refolding is positive as well (Delta V(++)(NU)=53(+/-6) ml/mol) and, above 3 M urea, independent of the concentration of the denaturant. At low concentrations of urea or guanidinium thiocyanate, Delta V(++)(UN) decreases significantly, suggesting that compact unfolded forms become populated under these conditions. (c) 2002 Elsevier Science Ltd.

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Year:  2002        PMID: 12054827     DOI: 10.1016/S0022-2836(02)00165-1

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  7 in total

1.  Hydration of the folding transition state ensemble of a protein.

Authors:  Ludovic Brun; Daniel G Isom; Priya Velu; Bertrand García-Moreno; Catherine Ann Royer
Journal:  Biochemistry       Date:  2006-03-21       Impact factor: 3.162

2.  Minimizing frustration by folding in an aqueous environment.

Authors:  Carla Mattos; A Clay Clark
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013

3.  Transition state and ground state properties of the helix-coil transition in peptides deduced from high-pressure studies.

Authors:  Sabine Neumaier; Maren Büttner; Annett Bachmann; Thomas Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

4.  Folding of the four-helix bundle FF domain from a compact on-pathway intermediate state is governed predominantly by water motion.

Authors:  Ashok Sekhar; Pramodh Vallurupalli; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-05       Impact factor: 11.205

5.  Size and sequence and the volume change of protein folding.

Authors:  Jean-Baptiste Rouget; Tural Aksel; Julien Roche; Jean-Louis Saldana; Angel E Garcia; Doug Barrick; Catherine A Royer
Journal:  J Am Chem Soc       Date:  2011-03-29       Impact factor: 15.419

6.  15N relaxation study of the cold shock protein CspB at various solvent viscosities.

Authors:  Markus Zeeb; Maik H Jacob; Thomas Schindler; Jochen Balbach
Journal:  J Biomol NMR       Date:  2003-11       Impact factor: 2.835

7.  Trehalose-enzyme interactions result in structure stabilization and activity inhibition. The role of viscosity.

Authors:  José G Sampedro; Salvador Uribe
Journal:  Mol Cell Biochem       Date:  2004 Jan-Feb       Impact factor: 3.396

  7 in total

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