Literature DB >> 12051936

Mechanisms of metal ion action in Tn10 transposition.

John S Allingham1, David B Haniford.   

Abstract

Tn10/IS10 transposition involves assembly of a synaptic complex (or transpososome) in which two transposon ends are paired, followed by four distinct chemical steps at each transposon end. The chemical steps are dependent on the presence of a suitable divalent metal cation (Me(2+)). Transpososome assembly and structure are also affected by Me(2+). To gain further insight into the mechanisms of Me(2+) action in Tn10/IS10 transposition we have investigated the effects of substituting Mn(2+) for Mg(2+), the physiologic Me(2+), in transposition. We have also investigated the significance of an Me(2+)-assisted conformational change in transpososome structure. We show that Mn(2+) has two previously unrecognized effects on the Tn10 donor cleavage reaction. It accelerates the rates of hairpin formation and hairpin resolution without significantly affecting the rate of the first chemical step, first strand nicking. Mn(2+) also relaxes the specificity of first strand nicking. We also show that Me(2+)-assisted transpososome unfolding coincides with a structural transition in the transposon-donor junction that may be necessary for hairpin formation. Possible mechanisms for these observations are considered.

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Year:  2002        PMID: 12051936     DOI: 10.1016/S0022-2836(02)00297-8

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  10 in total

1.  IHF-independent assembly of the Tn10 strand transfer transpososome: implications for inhibition of disintegration.

Authors:  Barry J Stewart; Simon J Wardle; David B Haniford
Journal:  EMBO J       Date:  2002-08-15       Impact factor: 11.598

2.  A high-throughput assay for Tn5 Tnp-induced DNA cleavage.

Authors:  Brandon Ason; William S Reznikoff
Journal:  Nucleic Acids Res       Date:  2004-06-16       Impact factor: 16.971

3.  The global regulator H-NS acts directly on the transpososome to promote Tn10 transposition.

Authors:  Simon J Wardle; Michelle O'Carroll; Keith M Derbyshire; David B Haniford
Journal:  Genes Dev       Date:  2005-09-15       Impact factor: 11.361

4.  DNA transposons: nature and applications in genomics.

Authors:  Martín Muñoz-López; José L García-Pérez
Journal:  Curr Genomics       Date:  2010-04       Impact factor: 2.236

5.  Cofactor requirement of HpyAV restriction endonuclease.

Authors:  Siu-Hong Chan; Lars Opitz; Lauren Higgins; Diana O'loane; Shuang-Yong Xu
Journal:  PLoS One       Date:  2010-02-05       Impact factor: 3.240

6.  Early interrogation and recognition of DNA sequence by indirect readout.

Authors:  Elizabeth J Little; Andrea C Babic; Nancy C Horton
Journal:  Structure       Date:  2008-12-10       Impact factor: 5.006

7.  Divalent metal ion differentially regulates the sequential nicking reactions of the GIY-YIG homing endonuclease I-BmoI.

Authors:  Benjamin P Kleinstiver; Wesley Bérubé-Janzen; Andrew D Fernandes; David R Edgell
Journal:  PLoS One       Date:  2011-08-22       Impact factor: 3.240

8.  Transposition of Mboumar-9: identification of a new naturally active mariner-family transposon.

Authors:  Martín Muñoz-López; Azeem Siddique; Julien Bischerour; Pedro Lorite; Ronald Chalmers; Teresa Palomeque
Journal:  J Mol Biol       Date:  2008-07-23       Impact factor: 5.469

9.  H-NS binds with high affinity to the Tn10 transpososome and promotes transpososome stabilization.

Authors:  Simon J Wardle; Amanda Chan; David B Haniford
Journal:  Nucleic Acids Res       Date:  2009-08-20       Impact factor: 16.971

10.  The processing of repetitive extragenic palindromes: the structure of a repetitive extragenic palindrome bound to its associated nuclease.

Authors:  Simon A J Messing; Bao Ton-Hoang; Alison B Hickman; Andrew J McCubbin; Graham F Peaslee; Rodolfo Ghirlando; Michael Chandler; Fred Dyda
Journal:  Nucleic Acids Res       Date:  2012-08-09       Impact factor: 16.971

  10 in total

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