Literature DB >> 12045111

Mechanism of fast protein folding.

Jeffrey K Myers1, Terrence G Oas.   

Abstract

An explosion of in vitro experimental data on the folding of proteins has revealed many examples of folding in the millisecond or faster timescale, often occurring in the absence of stable intermediate states. We review experimental methods for measuring fast protein folding kinetics, and then discuss various analytical models used to interpret these data. Finally, we classify general mechanisms that have been proposed to explain fast protein folding into two catagories, heterogeneous and homogeneous, reflecting the nature of the transition state. One heterogeneous mechanism, the diffusion-collision mechanism, can be used to interpret experimental data for a number of proteins.

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Year:  2001        PMID: 12045111     DOI: 10.1146/annurev.biochem.71.110601.135346

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  22 in total

1.  Single-molecule transition-state analysis of RNA folding.

Authors:  Gregory Bokinsky; David Rueda; Vinod K Misra; Maria M Rhodes; Andrew Gordus; Hazen P Babcock; Nils G Walter; Xiaowei Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-17       Impact factor: 11.205

2.  Variations in the fast folding rates of the lambda-repressor: a hybrid molecular dynamics study.

Authors:  Taras V Pogorelov; Zaida Luthey-Schulten
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

3.  Fast folding of a helical protein initiated by the collision of unstructured chains.

Authors:  W Kevin Meisner; Tobin R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-03       Impact factor: 11.205

4.  Fast and faster: a designed variant of the B-domain of protein A folds in 3 microsec.

Authors:  Pooja Arora; Terrence G Oas; Jeffrey K Myers
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

5.  Intermediates and the folding of proteins L and G.

Authors:  Scott Brown; Teresa Head-Gordon
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

6.  Cooperative alpha-helix unfolding in a protein-DNA complex from hydrogen-deuterium exchange.

Authors:  Roberto K Salinas; Tammo Diercks; Robert Kaptein; Rolf Boelens
Journal:  Protein Sci       Date:  2006-06-02       Impact factor: 6.725

7.  Ultrarapid mixing experiments shed new light on the characteristics of the initial conformational ensemble during the folding of ribonuclease A.

Authors:  Ervin Welker; Kosuke Maki; M C Ramachandra Shastry; Darmawi Juminaga; Rajiv Bhat; Harold A Scheraga; Heinrich Roder
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-01       Impact factor: 11.205

8.  Unfolding of Green Fluorescent Protein mut2 in wet nanoporous silica gels.

Authors:  Barbara Campanini; Sara Bologna; Fabio Cannone; Giuseppe Chirico; Andrea Mozzarelli; Stefano Bettati
Journal:  Protein Sci       Date:  2005-03-31       Impact factor: 6.725

9.  Tracking unfolding and refolding of single GFPmut2 molecules.

Authors:  Fabio Cannone; Sara Bologna; Barbara Campanini; Alberto Diaspro; Stefano Bettati; Andrea Mozzarelli; Giuseppe Chirico
Journal:  Biophys J       Date:  2005-07-01       Impact factor: 4.033

10.  Principal component analysis for protein folding dynamics.

Authors:  Gia G Maisuradze; Adam Liwo; Harold A Scheraga
Journal:  J Mol Biol       Date:  2008-10-15       Impact factor: 5.469

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