Literature DB >> 12034435

1H-NMR parameters of common amino acid residues measured in aqueous solutions of the linear tetrapeptides Gly-Gly-X-Ala at pressures between 0.1 and 200 MPa.

Martin Reinhard Arnold1, Werner Kremer, Hans Dietrich Lüdemann, Hans Robert Kalbitzer.   

Abstract

For the interpretation of chemical shift changes induced by pressure in proteins, a comparison with random-coil data is important. For providing such a data basis, the pressure dependence of the 1H-NMR chemical shifts of the amino acids X in the random-coil model peptides Gly-Gly-X-Ala were studied for the 20 common amino acids at two pH values (pH 5.0 and 5.4) at 305 K, in the pressure range from 0.1 to 200 MPa. The largest shift changes deltadelta with pressure p can be observed for the backbone amide protons. The average linear pressure coefficient delta(deltap) is 0.38 ppm GPa(-1), with a root mean square deviation of 0.2 ppm GPa(-1). In contrast to the downfield shift typical for amide protons, the H(alpha)-resonances typically shift upfield, with a pressure coefficient of -0.025 ppm GPa(-1) and a root mean square deviation of 0.05 ppm GPa(-1). The side chain resonances are only weakly influenced by pressure, on average they are shifted by 0.014 ppm GPa(-1)) with a root mean square deviation of 0.14 ppm GPa(-1). The exceptions are the side chain amide protons of asparagine and glutamine. Here, values of 0.214 (Asn H(delta21)), 0.417 (Asn H(delta22)), 0.260 (Gln H(varepsilon21)) and 0.395 (Gln H(varepsilon22)) ppm GPa(-1) can be observed. In both cases, the pressure dependent shift is larger for the pro-E proton than for the pro-Z proton. Within the limits of error the equilibrium constant for the trans- and cis-conformers at the proline peptide bond is independent of pressure in the pressure range studied.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 12034435     DOI: 10.1016/s0301-4622(02)00018-2

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  11 in total

1.  Using NMR Chemical Shifts to Determine Residue-Specific Secondary Structure Populations for Intrinsically Disordered Proteins.

Authors:  Wade M Borcherds; Gary W Daughdrill
Journal:  Methods Enzymol       Date:  2018-10-22       Impact factor: 1.600

2.  Dynamics in the solid-state: perspectives for the investigation of amyloid aggregates, membrane proteins and soluble protein complexes.

Authors:  Rasmus Linser; Riddhiman Sarkar; Alexey Krushelnitzky; Andi Mainz; Bernd Reif
Journal:  J Biomol NMR       Date:  2014-03-05       Impact factor: 2.835

3.  Pressure dependence of side chain 13C chemical shifts in model peptides Ac-Gly-Gly-Xxx-Ala-NH2.

Authors:  Markus Beck Erlach; Joerg Koehler; Edson Crusca; Claudia E Munte; Masatsune Kainosho; Werner Kremer; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2017-09-14       Impact factor: 2.835

4.  Role of chirality in peptide-induced formation of cholesterol-rich domains.

Authors:  Richard M Epand; Scott D Rychnovsky; Jitendra D Belani; Raquel F Epand
Journal:  Biochem J       Date:  2005-09-01       Impact factor: 3.857

5.  Pressure response of amide one-bond J-couplings in model peptides and proteins.

Authors:  Joerg Koehler; Markus Beck Erlach; Edson Crusca; Werner Kremer; Claudia E Munte; Alexander Meier; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2014-08-13       Impact factor: 2.835

6.  Infrequent cavity-forming fluctuations in HPr from Staphylococcus carnosus revealed by pressure- and temperature-dependent tyrosine ring flips.

Authors:  Mineyuki Hattori; Hua Li; Hiroaki Yamada; Kazuyuki Akasaka; Wolfgang Hengstenberg; Wolfram Gronwald; Hans Robert Kalbitzer
Journal:  Protein Sci       Date:  2004-12       Impact factor: 6.725

7.  High-resolution structure of the histidine-containing phosphocarrier protein (HPr) from Staphylococcus aureus and characterization of its interaction with the bifunctional HPr kinase/phosphorylase.

Authors:  Till Maurer; Sebastian Meier; Norman Kachel; Claudia Elisabeth Munte; Sonja Hasenbein; Brigitte Koch; Wolfgang Hengstenberg; Hans Robert Kalbitzer
Journal:  J Bacteriol       Date:  2004-09       Impact factor: 3.490

8.  Pressure dependence of backbone chemical shifts in the model peptides Ac-Gly-Gly-Xxx-Ala-NH2.

Authors:  Markus Beck Erlach; Joerg Koehler; Edson Crusca; Werner Kremer; Claudia E Munte; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2016-06-22       Impact factor: 2.835

9.  Observation of intermediate states of the human prion protein by high pressure NMR spectroscopy.

Authors:  Norman Kachel; Werner Kremer; Ralph Zahn; Hans Robert Kalbitzer
Journal:  BMC Struct Biol       Date:  2006-07-17

10.  Pressure dependence of side chain 1H and 15N-chemical shifts in the model peptides Ac-Gly-Gly-Xxx-Ala-NH2.

Authors:  Markus Beck Erlach; Joerg Koehler; Claudia E Munte; Werner Kremer; Edson Crusca; Masatsune Kainosho; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2020-06-22       Impact factor: 2.835

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.