Literature DB >> 12022469

Deoxyribozymes: new activities and new applications.

G M Emilsson1, R R Breaker.   

Abstract

DNA in its single-stranded form has the ability to fold into complex three-dimensional structures that serve as highly specific receptors or catalysts. Only protein enzymes and ribozymes are known to be responsible for biological catalysis, but deoxyribozymes with kinetic parameters that rival ribozymes can be created in the laboratory. Some of these engineered DNA catalysts are showing surprising potential as therapeutic agents, which makes them biologically relevant if not biologically derived. If DNA's natural role is strictly genomic, how significant is its innate catalytic prowess? New examples of engineered deoxyribozymes serve as empirical examples of the potential for catalysis by DNA. These results indicate that the true catalytic power of DNA is limited by discovery and not by chemistry.

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Year:  2002        PMID: 12022469     DOI: 10.1007/s00018-002-8452-4

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  24 in total

1.  A novel replicating circular DNAzyme.

Authors:  Fei Chen; Ruijian Wang; Zhe Li; Bin Liu; Xiaoping Wang; Yanhong Sun; Dongyun Hao; Jin Zhang
Journal:  Nucleic Acids Res       Date:  2004-04-28       Impact factor: 16.971

2.  Quantitative detection of siRNA and single-stranded oligonucleotides: relationship between uptake and biological activity of siRNA.

Authors:  Marita Overhoff; Winfried Wünsche; Georg Sczakiel
Journal:  Nucleic Acids Res       Date:  2004-12-02       Impact factor: 16.971

3.  Zn2+-dependent deoxyribozymes that form natural and unnatural RNA linkages.

Authors:  Kelly A Hoadley; Whitney E Purtha; Amanda C Wolf; Amber Flynn-Charlebois; Scott K Silverman
Journal:  Biochemistry       Date:  2005-06-28       Impact factor: 3.162

4.  Cleavage-based signal amplification of RNA.

Authors:  Yongyun Zhao; Li Zhou; Zhuo Tang
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

5.  Parallel selections in vitro reveal a preference for 2'-5' RNA ligation upon deoxyribozyme-mediated opening of a 2',3'-cyclic phosphate.

Authors:  Daniel R Semlow; Scott K Silverman
Journal:  J Mol Evol       Date:  2005-06-30       Impact factor: 2.395

6.  A continuous kinetic assay for RNA-cleaving deoxyribozymes, exploiting ethidium bromide as an extrinsic fluorescent probe.

Authors:  Davide Ferrari; Alessio Peracchi
Journal:  Nucleic Acids Res       Date:  2002-10-15       Impact factor: 16.971

7.  Is there a future for DNA-based molecular devices in diabetes management?

Authors:  Steven Taylor; Milan N Stojanovic
Journal:  J Diabetes Sci Technol       Date:  2007-05

8.  Divide and Control: Comparison of Split and Switch Hybridization Sensors.

Authors:  Alexandra L Smith; Dmitry M Kolpashchikov
Journal:  ChemistrySelect       Date:  2017-07-04       Impact factor: 2.109

9.  Electroporation-mediated delivery of catalytic oligodeoxynucleotides for manipulation of vascular gene expression.

Authors:  Elizabeth A Nunamaker; Hai-Ying Zhang; Yuichi Shirasawa; Joseph N Benoit; David A Dean
Journal:  Am J Physiol Heart Circ Physiol       Date:  2003-07-24       Impact factor: 4.733

10.  Systematic analysis of the role of target site accessibility in the activity of DNA enzymes.

Authors:  Graeme Doran; Muhammad Sohail
Journal:  J RNAi Gene Silencing       Date:  2006-07-28
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