Literature DB >> 12009249

Preferential amino acid sequences in alumina-catalyzed peptide bond formation.

J Bujdák1, B M Rode.   

Abstract

The catalytic effect of activated alumina on amino acid condensation was investigated. The readiness of amino acids to form peptide sequences was estimated on the basis of the yield of dipeptides and was found to decrease in the order glycine (Gly), alanine (Ala), leucine (Leu), valine (Val), proline (Pro). For example, approximately 15% Gly was converted to the dipeptide (Gly(2)), 5% to cyclic anhydride (cyc(Gly(2))) and small amounts of tri- (Gly(3)) and tetrapeptide (Gly(4)) were formed after 28 days. On the other hand, only trace amounts of Pro(2) were formed from proline under the same conditions. Preferential formation of certain sequences was observed in the mixed reaction systems containing two amino acids. For example, almost ten times more Gly-Val than Val-Gly was formed in the Gly+Val reaction system. The preferred sequences can be explained on the basis of an inductive effect that side groups have on the nucleophilicity and electrophilicity, respectively, of the amino and carboxyl groups. A comparison with published data of amino acid reactions in other reaction systems revealed that the main trends of preferential sequence formation were the same as those described for the salt-induced peptide formation (SIPF) reaction. The results of this work and other previously published papers show that alumina and related mineral surfaces might have played a crucial role in the prebiotic formation of the first peptides on the primitive earth.

Entities:  

Year:  2002        PMID: 12009249     DOI: 10.1016/s0162-0134(02)00395-1

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  9 in total

Review 1.  Adsorption and polymerization of amino acids on mineral surfaces: a review.

Authors:  Jean-François Lambert
Journal:  Orig Life Evol Biosph       Date:  2008-03-15       Impact factor: 1.950

2.  Water-assisted peptide bond formation between two double amino acid molecules in the gas phase.

Authors:  Sylwia Freza
Journal:  J Mol Model       Date:  2019-06-07       Impact factor: 1.810

3.  Glycine Polymerization on Oxide Minerals.

Authors:  Norio Kitadai; Hiroyuki Oonishi; Koichiro Umemoto; Tomohiro Usui; Keisuke Fukushi; Satoru Nakashima
Journal:  Orig Life Evol Biosph       Date:  2016-07-29       Impact factor: 1.950

4.  Uniquely localized intra-molecular amino acid concentrations at the glycolytic enzyme catalytic/active centers of Archaea, Bacteria and Eukaryota are associated with their proposed temporal appearances on earth.

Authors:  J Dennis Pollack; David Gerard; Dennis K Pearl
Journal:  Orig Life Evol Biosph       Date:  2013-05-29       Impact factor: 1.950

5.  Concentration of specific amino acids at the catalytic/active centers of highly-conserved "housekeeping" enzymes of central metabolism in archaea, bacteria and Eukaryota: is there a widely conserved chemical signal of prebiotic assembly?

Authors:  J Dennis Pollack; Xueliang Pan; Dennis K Pearl
Journal:  Orig Life Evol Biosph       Date:  2010-01-13       Impact factor: 1.950

6.  Thermal Condensation of Glycine and Alanine on Metal Ferrite Surface: Primitive Peptide Bond Formation Scenario.

Authors:  Md Asif Iqubal; Rachana Sharma; Sohan Jheeta
Journal:  Life (Basel)       Date:  2017-03-27

Review 7.  Tracing the Primordial Chemical Life of Glycine: A Review from Quantum Chemical Simulations.

Authors:  Albert Rimola; Nadia Balucani; Cecilia Ceccarelli; Piero Ugliengo
Journal:  Int J Mol Sci       Date:  2022-04-12       Impact factor: 6.208

8.  Chemical Transformations in Proto-Cytoplasmic Media. Phosphorus Coupling in the Silica Hydrogel Phase.

Authors:  Ian B Gorrell; Timothy W Henderson; Kamal Albdeery; Philip M Savage; Terence P Kee
Journal:  Life (Basel)       Date:  2017-11-19

9.  Prebiotic Peptide Bond Formation Through Amino Acid Phosphorylation. Insights from Quantum Chemical Simulations.

Authors:  Berta Martínez-Bachs; Albert Rimola
Journal:  Life (Basel)       Date:  2019-09-16
  9 in total

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