Literature DB >> 12001222

Modeling of protein interactions in genomes.

Sandor Vajda1, Ilya A Vakser, Michael J E Sternberg, Joël Janin.   

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Year:  2002        PMID： 12001222     DOI： 10.1002/prot.10112

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


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  15 in total

1.  A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13-19.

Authors:  Aroop Sircar; Sidhartha Chaudhury; Krishna Praneeth Kilambi; Monica Berrondo; Jeffrey J Gray
Journal:  Proteins       Date:  2010-11-15

2.  An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.

Authors:  Chi Zhang; Song Liu; Hongyi Zhou; Yaoqi Zhou
Journal:  Protein Sci       Date:  2004-02       Impact factor: 6.725

3.  Computational approaches to protein-protein interaction.

Authors:  Giacomo Franzot; Oliviero Carugo
Journal:  J Struct Funct Genomics       Date:  2003

4.  Optimization of electrostatic interactions in protein-protein complexes.

Authors:  Kelly Brock; Kemper Talley; Kacey Coley; Petras Kundrotas; Emil Alexov
Journal:  Biophys J       Date:  2007-08-10       Impact factor: 4.033

Review 5.  Protein-protein docking: from interaction to interactome.

Authors:  Ilya A Vakser
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

6.  Modeling complexes of modeled proteins.

Authors:  Ivan Anishchenko; Petras J Kundrotas; Ilya A Vakser
Journal:  Proteins       Date:  2016-10-24

7.  Modeling oblong proteins and water-mediated interfaces with RosettaDock in CAPRI rounds 28-35.

Authors:  Nicholas A Marze; Jeliazko R Jeliazkov; Shourya S Roy Burman; Scott E Boyken; Frank DiMaio; Jeffrey J Gray
Journal:  Proteins       Date:  2016-10-24

8.  Recognition of protein complexation based on hydrophobicity distribution.

Authors:  Mateusz Banach; Irena Roterman
Journal:  Bioinformation       Date:  2009-09-30

9.  Modeling effects of human single nucleotide polymorphisms on protein-protein interactions.

Authors:  Shaolei Teng; Thomas Madej; Anna Panchenko; Emil Alexov
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

10.  SnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology models.

Authors:  Aroop Sircar; Jeffrey J Gray
Journal:  PLoS Comput Biol       Date:  2010-01-22       Impact factor: 4.475
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