Literature DB >> 12000832

Reconstitution of the base excision repair pathway for 7,8-dihydro-8-oxoguanine with purified human proteins.

B Pascucci1, G Maga, U Hübscher, M Bjoras, E Seeberg, I D Hickson, G Villani, C Giordano, L Cellai, E Dogliotti.   

Abstract

In mammalian cells, repair of the most abundant endogenous premutagenic lesion in DNA, 7,8-dihydro-8-oxoguanine (8-oxoG), is initiated by the bifunctional DNA glycosylase OGG1. By using purified human proteins, we have reconstituted repair of 8-oxoG lesions in DNA in vitro on a plasmid DNA substrate containing a single 8-oxoG residue. It is shown that efficient and complete repair requires only hOGG1, the AP endonuclease HAP1, DNA polymerase (Pol) beta and DNA ligase I. After glycosylase base removal, repair occurred through the AP lyase step of hOGG1 followed by removal of the 3'-terminal sugar phosphate by the 3'-diesterase activity of HAP1. Addition of PCNA had a slight stimulatory effect on repair. Fen1 or high concentrations of Pol beta were required to induce strand displacement DNA synthesis at incised 8-oxoG in the absence of DNA ligase. Fen1 induced Pol beta strand displacement DNA synthesis at HAP1-cleaved AP sites differently from that at gaps introduced by hOGG1/HAP1 at 8-oxoG sites. In the presence of DNA ligase I, the repair reaction at 8-oxoG was confined to 1 nt replacement, even in the presence of high levels of Pol beta and Fen1. Thus, the assembly of all the core proteins for 8-oxoG repair catalyses one major pathway that involves single nucleotide repair patches.

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Year:  2002        PMID: 12000832      PMCID: PMC115284          DOI: 10.1093/nar/30.10.2124

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  35 in total

Review 1.  Mammalian DNA single-strand break repair: an X-ra(y)ted affair.

Authors:  K W Caldecott
Journal:  Bioessays       Date:  2001-05       Impact factor: 4.345

2.  Opposite base-dependent reactions of a human base excision repair enzyme on DNA containing 7,8-dihydro-8-oxoguanine and abasic sites.

Authors:  M Bjorâs; L Luna; B Johnsen; E Hoff; T Haug; T Rognes; E Seeberg
Journal:  EMBO J       Date:  1997-10-15       Impact factor: 11.598

3.  Human RAD2 homolog 1 5'- to 3'-exo/endonuclease can efficiently excise a displaced DNA fragment containing a 5'-terminal abasic lesion by endonuclease activity.

Authors:  M S DeMott; B Shen; M S Park; R A Bambara; S Zigman
Journal:  J Biol Chem       Date:  1996-11-22       Impact factor: 5.157

4.  Specific interaction of DNA polymerase beta and DNA ligase I in a multiprotein base excision repair complex from bovine testis.

Authors:  R Prasad; R K Singhal; D K Srivastava; J T Molina; A E Tomkinson; S H Wilson
Journal:  J Biol Chem       Date:  1996-07-05       Impact factor: 5.157

5.  Reconstitution of DNA base excision-repair with purified human proteins: interaction between DNA polymerase beta and the XRCC1 protein.

Authors:  Y Kubota; R A Nash; A Klungland; P Schär; D E Barnes; T Lindahl
Journal:  EMBO J       Date:  1996-12-02       Impact factor: 11.598

6.  Involvement of XRCC1 and DNA ligase III gene products in DNA base excision repair.

Authors:  E Cappelli; R Taylor; M Cevasco; A Abbondandolo; K Caldecott; G Frosina
Journal:  J Biol Chem       Date:  1997-09-19       Impact factor: 5.157

7.  Stimulation of human 8-oxoguanine-DNA glycosylase by AP-endonuclease: potential coordination of the initial steps in base excision repair.

Authors:  J W Hill; T K Hazra; T Izumi; S Mitra
Journal:  Nucleic Acids Res       Date:  2001-01-15       Impact factor: 16.971

8.  The type of DNA glycosylase determines the base excision repair pathway in mammalian cells.

Authors:  P Fortini; E Parlanti; O M Sidorkina; J Laval; E Dogliotti
Journal:  J Biol Chem       Date:  1999-05-21       Impact factor: 5.157

9.  DNA ligase I and proliferating cell nuclear antigen form a functional complex.

Authors:  S Tom; L A Henricksen; M S Park; R A Bambara
Journal:  J Biol Chem       Date:  2001-04-30       Impact factor: 5.157

10.  XRCC1 polypeptide interacts with DNA polymerase beta and possibly poly (ADP-ribose) polymerase, and DNA ligase III is a novel molecular 'nick-sensor' in vitro.

Authors:  K W Caldecott; S Aoufouchi; P Johnson; S Shall
Journal:  Nucleic Acids Res       Date:  1996-11-15       Impact factor: 16.971

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  24 in total

1.  Long-patch DNA repair synthesis during base excision repair in mammalian cells.

Authors:  Ulrike Sattler; Philippe Frit; Bernard Salles; Patrick Calsou
Journal:  EMBO Rep       Date:  2003-04       Impact factor: 8.807

2.  The human checkpoint sensor and alternative DNA clamp Rad9-Rad1-Hus1 modulates the activity of DNA ligase I, a component of the long-patch base excision repair machinery.

Authors:  Ekaterina Smirnova; Magali Toueille; Enni Markkanen; Ulrich Hübscher
Journal:  Biochem J       Date:  2005-07-01       Impact factor: 3.857

3.  ATP-dependent chromatin remodeling is required for base excision repair in conventional but not in variant H2A.Bbd nucleosomes.

Authors:  Hervé Menoni; Didier Gasparutto; Ali Hamiche; Jean Cadet; Stefan Dimitrov; Philippe Bouvet; Dimitar Angelov
Journal:  Mol Cell Biol       Date:  2007-06-25       Impact factor: 4.272

4.  Long patch base excision repair compensates for DNA polymerase β inactivation by the C4'-oxidized abasic site.

Authors:  Aaron C Jacobs; Cortney R Kreller; Marc M Greenberg
Journal:  Biochemistry       Date:  2010-12-14       Impact factor: 3.162

5.  Characterization of DNA glycosylase activity by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Authors:  Agus Darwanto; Alvin Farrel; Daniel K Rogstad; Lawrence C Sowers
Journal:  Anal Biochem       Date:  2009-07-14       Impact factor: 3.365

6.  Nuclease-deficient FEN-1 blocks Rad51/BRCA1-mediated repair and causes trinucleotide repeat instability.

Authors:  Craig Spiro; Cynthia T McMurray
Journal:  Mol Cell Biol       Date:  2003-09       Impact factor: 4.272

7.  Mutation versus repair: NEIL1 removal of hydantoin lesions in single-stranded, bulge, bubble, and duplex DNA contexts.

Authors:  Xiaobei Zhao; Nirmala Krishnamurthy; Cynthia J Burrows; Sheila S David
Journal:  Biochemistry       Date:  2010-03-02       Impact factor: 3.162

8.  Functional activation of ATM by the prostate cancer suppressor NKX3.1.

Authors:  Cai Bowen; Jeong-Ho Ju; Ji-Hoon Lee; Tanya T Paull; Edward P Gelmann
Journal:  Cell Rep       Date:  2013-07-25       Impact factor: 9.423

9.  Expression of 8-oxoguanine DNA glycosylase (Ogg1) in mouse retina.

Authors:  Karine Bigot; Julia Leemput; Monique Vacher; Anna Campalans; J Pablo Radicella; Emmanuelle Lacassagne; Alexandra Provost; Christel Masson; Maurice Menasche; Marc Abitbol
Journal:  Mol Vis       Date:  2009-06-05       Impact factor: 2.367

10.  Sources of extracellular, oxidatively-modified DNA lesions: implications for their measurement in urine.

Authors:  Marcus S Cooke; Paul T Henderson; Mark D Evans
Journal:  J Clin Biochem Nutr       Date:  2009-10-28       Impact factor: 3.114

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