Literature DB >> 11139613

Stimulation of human 8-oxoguanine-DNA glycosylase by AP-endonuclease: potential coordination of the initial steps in base excision repair.

J W Hill1, T K Hazra, T Izumi, S Mitra.   

Abstract

8-Oxoguanine-DNA glycosylase 1 (OGG1), with intrinsic AP lyase activity, is the major enzyme for repairing 7,8-dihydro-8-oxoguanine (8-oxoG), a critical mutagenic DNA lesion induced by reactive oxygen species. Human OGG1 excised the damaged base from an 8-oxoG. C-containing duplex oligo with a very low apparent k(cat) of 0.1 min(-1) at 37 degrees C and cleaved abasic (AP) sites at half the rate, thus leaving abasic sites as the major product. Excision of 8-oxoG by OGG1 alone did not follow Michaelis-Menten kinetics. However, in the presence of a comparable amount of human AP endonuclease (APE1) the specific activity of OGG1 was increased approximately 5-fold and Michaelis-Menten kinetics were observed. Inactive APE1, at a higher molar ratio, and a bacterial APE (Nfo) similarly enhanced OGG1 activity. The affinity of OGG1 for its product AP.C pair (K:(d) approximately 2.8 nM) was substantially higher than for its substrate 8-oxoG.C pair (K:(d) approximately 23. 4 nM) and the affinity for its final ss-elimination product was much lower (K:(d) approximately 233 nM). These data, as well as single burst kinetics studies, indicate that the enzyme remains tightly bound to its AP product following base excision and that APE1 prevents its reassociation with its product, thus enhancing OGG1 turnover. These results suggest coordinated functions of OGG1 and APE1, and possibly other enzymes, in the DNA base excision repair pathway.

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Year:  2001        PMID: 11139613      PMCID: PMC29662          DOI: 10.1093/nar/29.2.430

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  45 in total

1.  Human thymine DNA glycosylase binds to apurinic sites in DNA but is displaced by human apurinic endonuclease 1.

Authors:  T R Waters; P Gallinari; J Jiricny; P F Swann
Journal:  J Biol Chem       Date:  1999-01-01       Impact factor: 5.157

2.  Activation of apurinic/apyrimidinic endonuclease in human cells by reactive oxygen species and its correlation with their adaptive response to genotoxicity of free radicals.

Authors:  C V Ramana; I Boldogh; T Izumi; S Mitra
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-28       Impact factor: 11.205

3.  Accumulation of premutagenic DNA lesions in mice defective in removal of oxidative base damage.

Authors:  A Klungland; I Rosewell; S Hollenbach; E Larsen; G Daly; B Epe; E Seeberg; T Lindahl; D E Barnes
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

4.  Expression and differential intracellular localization of two major forms of human 8-oxoguanine DNA glycosylase encoded by alternatively spliced OGG1 mRNAs.

Authors:  K Nishioka; T Ohtsubo; H Oda; T Fujiwara; D Kang; K Sugimachi; Y Nakabeppu
Journal:  Mol Biol Cell       Date:  1999-05       Impact factor: 4.138

5.  Intragenic suppression of an active site mutation in the human apurinic/apyrimidinic endonuclease.

Authors:  T Izumi; J Malecki; M A Chaudhry; M Weinfeld; J H Hill; J C Lee; S Mitra
Journal:  J Mol Biol       Date:  1999-03-19       Impact factor: 5.469

6.  Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.

Authors:  S S Parikh; C D Mol; G Slupphaug; S Bharati; H E Krokan; J A Tainer
Journal:  EMBO J       Date:  1998-09-01       Impact factor: 11.598

7.  The presence of two distinct 8-oxoguanine repair enzymes in human cells: their potential complementary roles in preventing mutation.

Authors:  T K Hazra; T Izumi; L Maidt; R A Floyd; S Mitra
Journal:  Nucleic Acids Res       Date:  1998-11-15       Impact factor: 16.971

8.  Dynamics of the interaction of human apurinic endonuclease (Ape1) with its substrate and product.

Authors:  Y Masuda; R A Bennett; B Demple
Journal:  J Biol Chem       Date:  1998-11-13       Impact factor: 5.157

9.  Human mitochondrial uracil-DNA glycosylase preform (UNG1) is processed to two forms one of which is resistant to inhibition by AP sites.

Authors:  S Bharati; H E Krokan; L Kristiansen; M Otterlei; G Slupphaug
Journal:  Nucleic Acids Res       Date:  1998-11-01       Impact factor: 16.971

10.  Guanine is the target for direct ionisation damage in DNA, as detected using excision enzymes.

Authors:  T Melvin; S M Cunniffe; P O'Neill; A W Parker; T Roldan-Arjona
Journal:  Nucleic Acids Res       Date:  1998-11-01       Impact factor: 16.971

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  153 in total

1.  Telomere proteins POT1, TRF1 and TRF2 augment long-patch base excision repair in vitro.

Authors:  Adam S Miller; Lata Balakrishnan; Noah A Buncher; Patricia L Opresko; Robert A Bambara
Journal:  Cell Cycle       Date:  2012-03-01       Impact factor: 4.534

2.  Steady-state, pre-steady-state, and single-turnover kinetic measurement for DNA glycosylase activity.

Authors:  Akira Sassa; William A Beard; David D Shock; Samuel H Wilson
Journal:  J Vis Exp       Date:  2013-08-19       Impact factor: 1.355

3.  Rotational dynamics of DNA on the nucleosome surface markedly impact accessibility to a DNA repair enzyme.

Authors:  John M Hinz; Yesenia Rodriguez; Michael J Smerdon
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

Review 4.  Oxidative DNA damage repair in mammalian cells: a new perspective.

Authors:  Tapas K Hazra; Aditi Das; Soumita Das; Sujata Choudhury; Yoke W Kow; Rabindra Roy
Journal:  DNA Repair (Amst)       Date:  2006-11-20

5.  Redox regulation of apurinic/apyrimidinic endonuclease 1 activity in Long-Evans Cinnamon rats during spontaneous hepatitis.

Authors:  Soumendra Krishna Karmahapatra; Tapas Saha; Sanjay Adhikari; Jordan Woodrick; Rabindra Roy
Journal:  Mol Cell Biochem       Date:  2013-12-15       Impact factor: 3.396

6.  RPA physically interacts with the human DNA glycosylase NEIL1 to regulate excision of oxidative DNA base damage in primer-template structures.

Authors:  Corey A Theriot; Muralidhar L Hegde; Tapas K Hazra; Sankar Mitra
Journal:  DNA Repair (Amst)       Date:  2010-03-24

7.  A novel interaction between DNA ligase III and DNA polymerase gamma plays an essential role in mitochondrial DNA stability.

Authors:  Ananya De; Colin Campbell
Journal:  Biochem J       Date:  2007-02-15       Impact factor: 3.857

Review 8.  A unified view of base excision repair: lesion-dependent protein complexes regulated by post-translational modification.

Authors:  Karen H Almeida; Robert W Sobol
Journal:  DNA Repair (Amst)       Date:  2007-03-06

9.  Characterization of DNA glycosylase activity by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Authors:  Agus Darwanto; Alvin Farrel; Daniel K Rogstad; Lawrence C Sowers
Journal:  Anal Biochem       Date:  2009-07-14       Impact factor: 3.365

10.  Human AP endonuclease 1 stimulates multiple-turnover base excision by alkyladenine DNA glycosylase.

Authors:  Michael R Baldwin; Patrick J O'Brien
Journal:  Biochemistry       Date:  2009-06-30       Impact factor: 3.162

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