Literature DB >> 11983410

Compressibility gives new insight into protein dynamics and enzyme function.

Kunihiko Gekko1.   

Abstract

The adiabatic compressibility of enzyme is largely influenced by binding of coenzyme and substrate, due to the changes in atomic packing. Amino acid substitution also induces large changes in compressibility parallel to enzyme activity. These results demonstrate that a small alteration of local structure by ligand binding and mutation is dramatically magnified in the flexibility of protein molecule to affect the function. Compressibility gives new insight into protein dynamics and enzyme function from the aspect of atomic packing or cavity which cannot be obtained by other techniques.

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Year:  2002        PMID: 11983410     DOI: 10.1016/s0167-4838(01)00358-2

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  10 in total

1.  Local compressibilities of proteins: comparison of optical experiments and simulations for horse heart cytochrome-c.

Authors:  Christina Scharnagl; Maria Reif; Josef Friedrich
Journal:  Biophys J       Date:  2005-04-15       Impact factor: 4.033

2.  Pretransition and progressive softening of bovine carbonic anhydrase II as probed by single molecule atomic force microscopy.

Authors:  Rehana Afrin; Mohammad T Alam; Atsushi Ikai
Journal:  Protein Sci       Date:  2005-06       Impact factor: 6.725

3.  Decomposition of protein experimental compressibility into intrinsic and hydration shell contributions.

Authors:  Voichita M Dadarlat; Carol Beth Post
Journal:  Biophys J       Date:  2006-09-22       Impact factor: 4.033

4.  Transient conformational fluctuation of TePixD during a reaction.

Authors:  Kunisato Kuroi; Koji Okajima; Masahiko Ikeuchi; Satoru Tokutomi; Masahide Terazima
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-29       Impact factor: 11.205

Review 5.  Biomolecules under Pressure: Phase Diagrams, Volume Changes, and High Pressure Spectroscopic Techniques.

Authors:  László Smeller
Journal:  Int J Mol Sci       Date:  2022-05-20       Impact factor: 6.208

Review 6.  Enzymes from piezophiles.

Authors:  Toshiko Ichiye
Journal:  Semin Cell Dev Biol       Date:  2018-02-01       Impact factor: 7.727

7.  High-pressure protein crystal structure analysis of Escherichia coli dihydrofolate reductase complexed with folate and NADP.

Authors:  Takayuki Nagae; Hiroyuki Yamada; Nobuhisa Watanabe
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-09-03       Impact factor: 7.652

8.  Tuning Structure and Dynamics of Blue Copper Azurin Junctions via Single Amino-Acid Mutations.

Authors:  Maria Ortega; J G Vilhena; Linda A Zotti; Ismael Díez-Pérez; Juan Carlos Cuevas; Rubén Pérez
Journal:  Biomolecules       Date:  2019-10-15

9.  A novel ER membrane protein Ehg1/May24 plays a critical role in maintaining multiple nutrient permeases in yeast under high-pressure perturbation.

Authors:  Goyu Kurosaka; Satoshi Uemura; Takahiro Mochizuki; Yuri Kozaki; Akiko Hozumi; Sayuri Suwa; Ryoga Ishii; Yusuke Kato; Saki Imura; Natsuho Ishida; Yoichi Noda; Fumiyoshi Abe
Journal:  Sci Rep       Date:  2019-12-04       Impact factor: 4.379

Review 10.  Molecular Responses to High Hydrostatic Pressure in Eukaryotes: Genetic Insights from Studies on Saccharomyces cerevisiae.

Authors:  Fumiyoshi Abe
Journal:  Biology (Basel)       Date:  2021-12-09
  10 in total

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