Literature DB >> 11972012

Chemical shifts in amino acids, peptides, and proteins: from quantum chemistry to drug design.

Eric Oldfield1.   

Abstract

This chapter discusses recent progress in the investigation and use of (13)C, (15)N, and (19)F nuclear magnetic resonance (NMR) chemical shifts and chemical shift tensors in proteins and model systems primarily using quantum chemical (ab initio Hartree-Fock and density functional theory) techniques. Correlations between spectra and structure are made and the techniques applied to other spectroscopic and electrostatic properties as well, including hydrogen bonding, ligand binding to heme proteins, J-couplings, electric field gradients, and atoms-in-molecules theory, together with a brief review of the use of NMR chemical shifts in drug design.

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Year:  2001        PMID: 11972012     DOI: 10.1146/annurev.physchem.53.082201.124235

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  31 in total

1.  Unblocked statistical-coil tetrapeptides in aqueous solution: quantum-chemical computation of the carbon-13 NMR chemical shifts.

Authors:  Jorge A Vila; Héctor A Baldoni; Daniel R Ripoll; Harold A Scheraga
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

2.  Conformational distributions of denatured and unstructured proteins are similar to those of 20 × 20 blocked dipeptides.

Authors:  Kwang-Im Oh; Young-Sang Jung; Geum-Sook Hwang; Minhaeng Cho
Journal:  J Biomol NMR       Date:  2012-03-18       Impact factor: 2.835

3.  Position dependence of the 13C chemical shifts of alpha-helical model peptides. Fingerprint of the 20 naturally occurring amino acids.

Authors:  Jorge A Vila; Héctor A Baldoni; Harold A Scheraga
Journal:  Protein Sci       Date:  2004-11       Impact factor: 6.725

4.  An evaluation of chemical shift index-based secondary structure determination in proteins: influence of random coil chemical shifts.

Authors:  S P Mielke; V V Krishnan
Journal:  J Biomol NMR       Date:  2004-10       Impact factor: 2.835

5.  Probing site-specific conformational distributions in protein folding with solid-state NMR.

Authors:  Robert H Havlin; Robert Tycko
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-17       Impact factor: 11.205

6.  Magic-angle spinning solid-state NMR of a 144 kDa membrane protein complex: E. coli cytochrome bo3 oxidase.

Authors:  Heather L Frericks; Donghua H Zhou; Lai Lai Yap; Robert B Gennis; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2006-09-09       Impact factor: 2.835

7.  Predicting 13Calpha chemical shifts for validation of protein structures.

Authors:  Jorge A Vila; Myriam E Villegas; Hector A Baldoni; Harold A Scheraga
Journal:  J Biomol NMR       Date:  2007-06-09       Impact factor: 2.835

8.  Composite-180° pulse-based symmetry sequences to recouple proton chemical shift anisotropy tensors under ultrafast MAS solid-state NMR spectroscopy.

Authors:  Manoj Kumar Pandey; Michal Malon; Ayyalusamy Ramamoorthy; Yusuke Nishiyama
Journal:  J Magn Reson       Date:  2014-11-18       Impact factor: 2.229

9.  High resolution NMR spectroscopy of nanocrystalline proteins at ultra-high magnetic field.

Authors:  Lindsay J Sperling; Andrew J Nieuwkoop; Andrew S Lipton; Deborah A Berthold; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2009-12-02       Impact factor: 2.835

10.  NMR crystallography of enzyme active sites: probing chemically detailed, three-dimensional structure in tryptophan synthase.

Authors:  Leonard J Mueller; Michael F Dunn
Journal:  Acc Chem Res       Date:  2013-03-28       Impact factor: 22.384

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