Literature DB >> 11972010

Transition path sampling: throwing ropes over rough mountain passes, in the dark.

Peter G Bolhuis1, David Chandler, Christoph Dellago, Phillip L Geissler.   

Abstract

This article reviews the concepts and methods of transition path sampling. These methods allow computational studies of rare events without requiring prior knowledge of mechanisms, reaction coordinates, and transition states. Based upon a statistical mechanics of trajectory space, they provide a perspective with which time dependent phenomena, even for systems driven far from equilibrium, can be examined with the same types of importance sampling tools that in the past have been applied so successfully to static equilibrium properties.

Year:  2001        PMID: 11972010     DOI: 10.1146/annurev.physchem.53.082301.113146

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  313 in total

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4.  Transition-path sampling of beta-hairpin folding.

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6.  Calculation of mutational free energy changes in transition states for protein folding.

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Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

8.  Computational delineation of tyrosyl-substrate recognition and catalytic landscapes by the epidermal growth factor receptor tyrosine kinase domain.

Authors:  Yingting Liu; Ravi Radhakrishnan
Journal:  Mol Biosyst       Date:  2014-04-29

9.  Implicit membrane treatment of buried charged groups: application to peptide translocation across lipid bilayers.

Authors:  Themis Lazaridis; John M Leveritt; Leo PeBenito
Journal:  Biochim Biophys Acta       Date:  2014-02-10

10.  Directed Evolution as a Probe of Rate Promoting Vibrations Introduced via Mutational Change.

Authors:  Xi Chen; Steven D Schwartz
Journal:  Biochemistry       Date:  2018-03-22       Impact factor: 3.162

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