Literature DB >> 12829458

Engineering teams up with computer-simulation and visualization tools to probe biomolecular mechanisms.

Tamar Schlick1.   

Abstract

Mesh:

Substances:

Year:  2003        PMID: 12829458      PMCID: PMC1303059          DOI: 10.1016/S0006-3495(03)74448-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


× No keyword cloud information.
  19 in total

1.  Biased Brownian dynamics for rate constant calculation.

Authors:  G Zou; R D Skeel; S Subramaniam
Journal:  Biophys J       Date:  2000-08       Impact factor: 4.033

2.  Energetics of ion conduction through the K+ channel.

Authors:  S Bernèche; B Roux
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

3.  Time-trimming tricks for dynamic simulations: splitting force updates to reduce computational work.

Authors:  T Schlick
Journal:  Structure       Date:  2001-04-04       Impact factor: 5.006

4.  Steered molecular dynamics investigations of protein function.

Authors:  B Isralewitz; J Baudry; J Gullingsrud; D Kosztin; K Schulten
Journal:  J Mol Graph Model       Date:  2001       Impact factor: 2.518

Review 5.  New Monte Carlo algorithms for protein folding.

Authors:  U H Hansmann; Y Okamoto
Journal:  Curr Opin Struct Biol       Date:  1999-04       Impact factor: 6.809

6.  Absolute comparison of simulated and experimental protein-folding dynamics.

Authors:  Christopher D Snow; Houbi Nguyen; Vijay S Pande; Martin Gruebele
Journal:  Nature       Date:  2002-10-20       Impact factor: 49.962

7.  The worm's turn.

Authors:  Sydney Brenner
Journal:  Curr Biol       Date:  2002-10-29       Impact factor: 10.834

Review 8.  Molecular dynamics simulations of biomolecules.

Authors:  Martin Karplus; J Andrew McCammon
Journal:  Nat Struct Biol       Date:  2002-09

9.  Mechanisms of selectivity in channels and enzymes studied with interactive molecular dynamics.

Authors:  Paul Grayson; Emad Tajkhorshid; Klaus Schulten
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

10.  Glycerol kinase from Escherichia coli and an Ala65-->Thr mutant: the crystal structures reveal conformational changes with implications for allosteric regulation.

Authors:  M D Feese; H R Faber; C E Bystrom; D W Pettigrew; S J Remington
Journal:  Structure       Date:  1998-11-15       Impact factor: 5.006

View more
  3 in total

1.  Biomolecular free energy profiles by a shooting/umbrella sampling protocol, "BOLAS".

Authors:  Ravi Radhakrishnan; Tamar Schlick
Journal:  J Chem Phys       Date:  2004-08-01       Impact factor: 3.488

2.  Orchestration of cooperative events in DNA synthesis and repair mechanism unraveled by transition path sampling of DNA polymerase beta's closing.

Authors:  Ravi Radhakrishnan; Tamar Schlick
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-06       Impact factor: 11.205

3.  Molecular dynamics-based approaches for enhanced sampling of long-time, large-scale conformational changes in biomolecules.

Authors:  Tamar Schlick
Journal:  F1000 Biol Rep       Date:  2009-07-08
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.