Literature DB >> 11960008

Developmental specificity of recruitment of TBP to the TATA box of the human gamma-globin gene.

Zhi-Jun Duan1, Xiangdong Fang, Alex Rohde, Hemei Han, George Stamatoyannopoulos, Qiliang Li.   

Abstract

It is unclear whether the core promoter is involved in developmental regulation. To address this question, we mutated the TATA box of the human gamma-globin gene, produced transgenic mice, and examined the effect of the mutation during the course of mouse development. In our test system, the gamma-globin gene is expressed at similar levels in the embryonic and adult erythroid cells. The TATA box mutation dramatically reduced expression of the gamma-globin gene in the adult but not in embryonic erythroid cells. In addition, the disruption of the gamma TATA box significantly reduced the recruitment of TATA box-binding protein (TBP) in the adult cells, but not in embryonic cells, suggesting that the recruitment of TBP to the gamma gene promoter is developmentally specific. Similarly, the recruitment of transcription factor II B and RNA polymerase II to the gamma promoter was affected in the adult but not in embryonic cells. The distinct effects of the TATA mutation in the embryonic and adult developmental stages suggest that the basal transcription apparatus can be recruited to a core promoter in a developmental stage-dependent manner. The TATA mutation resulted in a shift of transcription initiation site 6 bp or longer upstream to the cap site both in the embryonic and adult erythrocytes. We conclude that the TATA box determines the initiation site but not the efficiency of transcription of the gamma-globin gene.

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Year:  2002        PMID: 11960008      PMCID: PMC122800          DOI: 10.1073/pnas.072084499

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Role of NF-Y in in vivo regulation of the gamma-globin gene.

Authors:  Z Duan; G Stamatoyannopoulos; Q Li
Journal:  Mol Cell Biol       Date:  2001-05       Impact factor: 4.272

2.  Promoter-selective properties of the TBP-related factor TRF1.

Authors:  M C Holmes; R Tjian
Journal:  Science       Date:  2000-05-05       Impact factor: 47.728

Review 3.  TBP-like factors come into focus.

Authors:  A J Berk
Journal:  Cell       Date:  2000-09-29       Impact factor: 41.582

4.  The TBP-like factor CeTLF is required to activate RNA polymerase II transcription during C. elegans embryogenesis.

Authors:  L Kaltenbach; M A Horner; J H Rothman; S E Mango
Journal:  Mol Cell       Date:  2000-09       Impact factor: 17.970

Review 5.  An RNA polymerase II in vitro transcription system.

Authors:  R Mantovani
Journal:  Methods Mol Biol       Date:  1994

Review 6.  Control of gene expression through regulation of the TATA-binding protein.

Authors:  B F Pugh
Journal:  Gene       Date:  2000-09-05       Impact factor: 3.688

7.  A downstream element in the human beta-globin promoter: evidence of extended sequence-specific transcription factor IID contacts.

Authors:  B A Lewis; T K Kim; S H Orkin
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

8.  TAF-Containing and TAF-independent forms of transcriptionally active TBP in vivo.

Authors:  L Kuras; P Kosa; M Mencia; K Struhl
Journal:  Science       Date:  2000-05-19       Impact factor: 47.728

9.  A basal transcription factor that activates or represses transcription.

Authors:  P J Willy; R Kobayashi; J T Kadonaga
Journal:  Science       Date:  2000-11-03       Impact factor: 47.728

10.  TBP-like factor is required for embryonic RNA polymerase II transcription in C. elegans.

Authors:  J C Dantonel; S Quintin; L Lakatos; M Labouesse; L Tora
Journal:  Mol Cell       Date:  2000-09       Impact factor: 17.970

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  19 in total

1.  Synergistic and additive properties of the beta-globin locus control region (LCR) revealed by 5'HS3 deletion mutations: implication for LCR chromatin architecture.

Authors:  Xiangdong Fang; Jin Sun; Ping Xiang; Man Yu; Patrick A Navas; Kenneth R Peterson; George Stamatoyannopoulos; Qiliang Li
Journal:  Mol Cell Biol       Date:  2005-08       Impact factor: 4.272

2.  Autonomous silencing as well as competition controls gamma-globin gene expression during development.

Authors:  Man Yu; Hemei Han; Ping Xiang; Qiliang Li; George Stamatoyannopoulos
Journal:  Mol Cell Biol       Date:  2006-07       Impact factor: 4.272

3.  Architecture of the sporulation-specific Cdc14 promoter from the oomycete Phytophthora infestans.

Authors:  Audrey M V Ah-Fong; Qijun Xiang; Howard S Judelson
Journal:  Eukaryot Cell       Date:  2007-10-19

Review 4.  Expression of different functional isoforms in haematopoiesis.

Authors:  Godfrey Grech; Joel Pollacco; Mark Portelli; Keith Sacco; Shawn Baldacchino; Justine Grixti; Christian Saliba
Journal:  Int J Hematol       Date:  2013-12-01       Impact factor: 2.490

5.  Identification of E74-like factor 1 (ELF1) as a transcriptional regulator of the Hox cofactor MEIS1.

Authors:  Ping Xiang; Chaoyu Lo; Bob Argiropoulos; C Benjamin Lai; Arefeh Rouhi; Suzan Imren; Xiaoyan Jiang; Dixie Mager; R Keith Humphries
Journal:  Exp Hematol       Date:  2010-06-23       Impact factor: 3.084

6.  Differences of globin transgene expression in stably transfected cell lines and transgenic mice.

Authors:  Qiliang Li; David W Emery; Hemei Han; Jin Sun; Man Yu; George Stamatoyannopoulos
Journal:  Blood       Date:  2004-12-30       Impact factor: 22.113

7.  The minimal promoter plays a major role in silencing of the galago gamma-globin gene in adult erythropoiesis.

Authors:  Qiliang Li; Xiangdong Fang; Hemei Han; George Stamatoyannopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-17       Impact factor: 11.205

8.  The higher structure of chromatin in the LCR of the beta-globin locus changes during development.

Authors:  Xiangdong Fang; Wenxuan Yin; Ping Xiang; Hemei Han; George Stamatoyannopoulos; Qiliang Li
Journal:  J Mol Biol       Date:  2009-09-23       Impact factor: 5.469

9.  A T9G mutation in the prototype TATA-box TCACTATATATAG determines nucleosome formation and synergy with upstream activator sequences in plant promoters.

Authors:  Amol Ranjan; Suraiya A Ansari; Rakesh Srivastava; Shrikant Mantri; Mehar H Asif; Samir V Sawant; Rakesh Tuli
Journal:  Plant Physiol       Date:  2009-10-07       Impact factor: 8.340

10.  Developmentally specific role of the CCAAT box in regulation of human gamma-globin gene expression.

Authors:  Xiangdong Fang; Hemei Han; George Stamatoyannopoulos; Qiliang Li
Journal:  J Biol Chem       Date:  2003-11-26       Impact factor: 5.157

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