Literature DB >> 11959979

Protein deamidation.

Noah E Robinson1.   

Abstract

A completely automatic computerized technique for the quantitative estimation of the deamidation rates of any protein for which the three-dimensional structure is known has been developed. Calculations of the specific deamidation rates of 170,014 asparaginyl residues in 13,335 proteins have been carried out. The calculated values have good quantitative reliability when compared with experimental measurements. These rates demonstrate that deamidation may be a biologically relevant phenomenon in a remarkably large percentage of proteins.

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Year:  2002        PMID： 11959979      PMCID： PMC122761          DOI： 10.1073/pnas.082102799

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  26 in total

1.  Mass spectrometric evaluation of synthetic peptides as primary structure models for peptide and protein deamidation.

Authors:  N E Robinson; A B Robinson; R B Merrifield
Journal:  J Pept Res       Date:  2001-06

2.  Deamidation of human proteins.

Authors:  N E Robinson; A B Robinson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-16       Impact factor: 11.205

3.  Molecular clocks.

Authors:  N E Robinson; A B Robinson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

4.  Multiple forms of cytochrome c in the rat. Precursor-product relationship between the main component Cy I and the minor components Cy II and Cy 3 in vivo.

Authors:  T Flatmark; K Sletten
Journal:  J Biol Chem       Date:  1968-04-10       Impact factor: 5.157

5.  The specific nonenzymatic cleavage of bovine ribonuclease with hydroxylamine.

Authors:  P Bornstein; G Balian
Journal:  J Biol Chem       Date:  1970-09-25       Impact factor: 5.157

6.  Terminal marking of triosephosphate isomerase: consequences of deamidation.

Authors:  A Q Sun; K U Yüksel; R W Gracy
Journal:  Arch Biochem Biophys       Date:  1995-10-01       Impact factor: 4.013

7.  Prediction of protein deamidation rates from primary and three-dimensional structure.

Authors:  N E Robinson; A B Robinson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-10       Impact factor: 11.205

8.  Effect of the three-dimensional structure on the deamidation reaction of ribonuclease A.

Authors:  S Capasso; S Salvadori
Journal:  J Pept Res       Date:  1999-11

9.  Microheterogeneity of recombinant human phenylalanine hydroxylase as a result of nonenzymatic deamidations of labile amide containing amino acids. Effects on catalytic and stability properties.

Authors:  T Solstad; T Flatmark
Journal:  Eur J Biochem       Date:  2000-10

10.  Controlled deamidation of peptides and proteins: an experimental hazard and a possible biological timer.

Authors:  A B Robinson; J H McKerrow; P Cary
Journal:  Proc Natl Acad Sci U S A       Date:  1970-07       Impact factor: 11.205
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  67 in total

Review 1.  Stability of IgG isotypes in serum.

Authors:  Ivan R Correia
Journal:  MAbs       Date:  2010-05-16       Impact factor: 5.857

2.  Sequence and structure-based comparative analysis to assess, identify and improve the thermostability of penicillin G acylases.

Authors:  Priyabrata Panigrahi; Deepak Chand; Ruchira Mukherji; Sureshkumar Ramasamy; C G Suresh
Journal:  J Ind Microbiol Biotechnol       Date:  2015-09-29       Impact factor: 3.346

3.  Characterization of recombinant human IL-15 deamidation and its practical elimination through substitution of asparagine 77.

Authors:  David F Nellis; Dennis F Michiel; Man-Shiow Jiang; Dominic Esposito; Richard Davis; Hengguang Jiang; Angela Korrell; George C Knapp; Lauren E Lucernoni; Roy E Nelson; Emily M Pritt; Lauren V Procter; Mark Rogers; Terry L Sumpter; Vinay V Vyas; Timothy J Waybright; Xiaoyi Yang; Amy M Zheng; Jason L Yovandich; John A Gilly; George Mitra; Jianwei Zhu
Journal:  Pharm Res       Date:  2011-10-19       Impact factor: 4.200

4.  Assessing the Structures and Interactions of γD-Crystallin Deamidation Variants.

Authors:  Alex J Guseman; Matthew J Whitley; Jeremy J González; Nityam Rathi; Mikayla Ambarian; Angela M Gronenborn
Journal:  Structure       Date:  2020-12-01       Impact factor: 5.006

5.  Role of glutamine deamidation in neurodegenerative diseases associated with triplet repeat expansions: a hypothesis.

Authors:  Qurratulain Hasan; Ravindra Varma Alluri; Pragna Rao; Yog Raj Ahuja
Journal:  J Mol Neurosci       Date:  2006       Impact factor: 3.444

6.  Structure and function of a mitochondrial late embryogenesis abundant protein are revealed by desiccation.

Authors:  Dimitri Tolleter; Michel Jaquinod; Cécile Mangavel; Catherine Passirani; Patrick Saulnier; Stephen Manon; Emeline Teyssier; Nicole Payet; Marie-Hélène Avelange-Macherel; David Macherel
Journal:  Plant Cell       Date:  2007-05-25       Impact factor: 11.277

7.  Identification of amino acid substitutions in avian influenza virus (H5N1) matrix protein 1 by using nanoelectrospray MS and MS/MS.

Authors:  Ning Liu; Wenjun Song; Kim-Chung Lee; Pui Wang; Honglin Chen; Zongwei Cai
Journal:  J Am Soc Mass Spectrom       Date:  2008-10-18       Impact factor: 3.109

8.  Use of 18O labels to monitor deamidation during protein and peptide sample processing.

Authors:  Xiaojuan Li; Jason J Cournoyer; Cheng Lin; Peter B O'Connor
Journal:  J Am Soc Mass Spectrom       Date:  2008-03-05       Impact factor: 3.109

9.  Effect of N-1 and N-2 residues on peptide deamidation rate in solution and solid state.

Authors:  Bei Li; Richard L Schowen; Elizabeth M Topp; Ronald T Borchardt
Journal:  AAPS J       Date:  2006-03-20       Impact factor: 4.009

Review 10.  Effects of glycosylation on the stability of protein pharmaceuticals.

Authors:  Ricardo J Solá; Kai Griebenow
Journal:  J Pharm Sci       Date:  2009-04       Impact factor: 3.534
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