Literature DB >> 11943144

The identification of the acid-base catalyst of alpha-arabinofuranosidase from Geobacillus stearothermophilus T-6, a family 51 glycoside hydrolase.

Dalia Shallom1, Valery Belakhov, Dmitry Solomon, Sara Gilead-Gropper, Timor Baasov, Gil Shoham, Yuval Shoham.   

Abstract

The alpha-L-arabinofuranosidase from Geobacillus stearothermophilus T-6 (AbfA T-6) belongs to the retaining family 51 glycoside hydrolases. The conserved Glu175 was proposed to be the acid-base catalytic residue. AbfA T-6 exhibits residual activity towards aryl beta-D-xylopyranosides. This phenomenon was used to examine the catalytic properties of the putative acid-base mutant E175A. Data from kinetic experiments, pH profiles, azide rescue, and the identification of the xylopyranosyl azide product provide firm support to the assignment of Glu175 as the acid-base catalyst of AbfA T-6.

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Year:  2002        PMID: 11943144     DOI: 10.1016/s0014-5793(02)02343-8

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  24 in total

Review 1.  Alpha-L-arabinofuranosidases: the potential applications in biotechnology.

Authors:  Mondher Th Numan; Narayan B Bhosle
Journal:  J Ind Microbiol Biotechnol       Date:  2005-12-30       Impact factor: 3.346

2.  A two-component system regulates the expression of an ABC transporter for xylo-oligosaccharides in Geobacillus stearothermophilus.

Authors:  Smadar Shulami; Galia Zaide; Gennady Zolotnitsky; Yael Langut; Geoff Feld; Abraham L Sonenshein; Yuval Shoham
Journal:  Appl Environ Microbiol       Date:  2006-12-01       Impact factor: 4.792

3.  Enzymatic Mechanism for Arabinan Degradation and Transport in the Thermophilic Bacterium Caldanaerobius polysaccharolyticus.

Authors:  Daniel Wefers; Jia Dong; Ahmed M Abdel-Hamid; Hans Müller Paul; Gabriel V Pereira; Yejun Han; Dylan Dodd; Ramiya Baskaran; Beth Mayer; Roderick I Mackie; Isaac Cann
Journal:  Appl Environ Microbiol       Date:  2017-08-31       Impact factor: 4.792

4.  Hyperthermophilic alpha-L: -arabinofuranosidase from Thermotoga maritima MSB8: molecular cloning, gene expression, and characterization of the recombinant protein.

Authors:  Kentaro Miyazaki
Journal:  Extremophiles       Date:  2005-06-18       Impact factor: 2.395

5.  Crystallization and preliminary crystallographic analysis of a family 43 beta-D-xylosidase from Geobacillus stearothermophilus T-6.

Authors:  Christian Brüx; Karsten Niefind; Alon Ben-David; Maya Leon; Gil Shoham; Yuval Shoham; Dietmar Schomburg
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-11-12

Review 6.  The alpha-L-fucosidase from Sulfolobus solfataricus.

Authors:  Beatrice Cobucci-Ponzano; Fiorella Conte; Mosè Rossi; Marco Moracci
Journal:  Extremophiles       Date:  2007-08-09       Impact factor: 2.395

7.  Preliminary crystallographic analysis of Xyn52B2, a GH52 β-D-xylosidase from Geobacillus stearothermophilus T6.

Authors:  Roie Dann; Shifra Lansky; Noa Lavid; Arie Zehavi; Valery Belakhov; Timor Baasov; Hay Dvir; Babu Manjasetty; Hassan Belrhali; Yuval Shoham; Gil Shoham
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-11-28       Impact factor: 1.056

8.  Crystal structure and snapshots along the reaction pathway of a family 51 alpha-L-arabinofuranosidase.

Authors:  Klaus Hövel; Dalia Shallom; Karsten Niefind; Valery Belakhov; Gil Shoham; Timor Baasov; Yuval Shoham; Dietmar Schomburg
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

9.  Two Distinct α-l-Arabinofuranosidases in Caldicellulosiruptor Species Drive Degradation of Arabinose-Based Polysaccharides.

Authors:  Mohammad Abu Saleh; Wen-Jie Han; Ming Lu; Bing Wang; Huayue Li; Robert M Kelly; Fu-Li Li
Journal:  Appl Environ Microbiol       Date:  2017-06-16       Impact factor: 4.792

10.  Expression of an extremely acidic beta-1,4-glucanase from thermoacidophilic Alicyclobacillus sp. A4 in Pichia pastoris is improved by truncating the gene sequence.

Authors:  Yingguo Bai; Jianshe Wang; Zhifang Zhang; Pengjun Shi; Huiying Luo; Huoqing Huang; Chunliang Luo; Bin Yao
Journal:  Microb Cell Fact       Date:  2010-05-14       Impact factor: 5.328

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