Literature DB >> 17687508

The alpha-L-fucosidase from Sulfolobus solfataricus.

Beatrice Cobucci-Ponzano1, Fiorella Conte, Mosè Rossi, Marco Moracci.   

Abstract

Glycoside hydrolases form hyperthermophilic archaea are interesting model systems for the study of catalysis at high temperatures and, at the moment, their detailed enzymological characterization is the only approach to define their role in vivo. Family 29 of glycoside hydrolases classification groups alpha-L-fucosidases involved in a variety of biological events in Bacteria and Eukarya. In Archaea the first alpha-L-fucosidase was identified in Sulfolobus solfataricus as interrupted gene expressed by programmed -1 frameshifting. In this review, we describe the identification of the catalytic residues of the archaeal enzyme, by means of the chemical rescue strategy. The intrinsic stability of the hyperthermophilic enzyme allowed the use of this method, which resulted of general applicability for beta and alpha glycoside hydrolases. In addition, the presence in the active site of the archaeal enzyme of a triad of catalytic residues is a rather uncommon feature among the glycoside hydrolases and suggested that in family 29 slightly different catalytic machineries coexist.

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Year:  2007        PMID: 17687508     DOI: 10.1007/s00792-007-0105-y

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  48 in total

1.  RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression.

Authors:  P V Baranov; O L Gurvich; O Fayet; M F Prère; W A Miller; R F Gesteland; J F Atkins; M C Giddings
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  AtFXG1, an Arabidopsis gene encoding alpha-L-fucosidase active against fucosylated xyloglucan oligosaccharides.

Authors:  Francisco de La Torre; Javier Sampedro; Ignacio Zarra; Gloria Revilla
Journal:  Plant Physiol       Date:  2002-01       Impact factor: 8.340

3.  Enzymatic synthesis of alpha-L-fucosyl-N-acetyllactosamines and 3'-O-alpha-L-fucosyllactose utilizing alpha-L-fucosidases.

Authors:  T Murata; S Morimoto; X Zeng; S Watanabe; T Usui
Journal:  Carbohydr Res       Date:  1999-08-15       Impact factor: 2.104

4.  New families in the classification of glycosyl hydrolases based on amino acid sequence similarities.

Authors:  B Henrissat; A Bairoch
Journal:  Biochem J       Date:  1993-08-01       Impact factor: 3.857

5.  Glycosylation alterations of cells in late phase apoptosis from colon carcinomas.

Authors:  E Rapoport; J L Pendu
Journal:  Glycobiology       Date:  1999-12       Impact factor: 4.313

6.  Mechanistic consequences of mutation of active site carboxylates in a retaining beta-1,4-glycanase from Cellulomonas fimi.

Authors:  A M MacLeod; D Tull; K Rupitz; R A Warren; S G Withers
Journal:  Biochemistry       Date:  1996-10-08       Impact factor: 3.162

7.  Unequivocal identification of Asp-214 as the catalytic nucleophile of Saccharomyces cerevisiae alpha-glucosidase using 5-fluoro glycosyl fluorides.

Authors:  J D McCarter; S G Withers
Journal:  J Biol Chem       Date:  1996-03-22       Impact factor: 5.157

8.  Mechanism, mutagenesis, and chemical rescue of a beta-mannosidase from cellulomonas fimi.

Authors:  David L Zechel; Stephen P Reid; Dominik Stoll; Oyekanmi Nashiru; R Antony J Warren; Stephen G Withers
Journal:  Biochemistry       Date:  2003-06-17       Impact factor: 3.162

9.  The gene of an archaeal alpha-L-fucosidase is expressed by translational frameshifting.

Authors:  Beatrice Cobucci-Ponzano; Fiorella Conte; Dario Benelli; Paola Londei; Angela Flagiello; Maria Monti; Piero Pucci; Mosè Rossi; Marco Moracci
Journal:  Nucleic Acids Res       Date:  2006-08-18       Impact factor: 16.971

Review 10.  Biological roles of oligosaccharides: all of the theories are correct.

Authors:  A Varki
Journal:  Glycobiology       Date:  1993-04       Impact factor: 4.313

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  2 in total

1.  GlcNAc De-N-Acetylase from the Hyperthermophilic Archaeon Sulfolobus solfataricus.

Authors:  Roberta Iacono; Andrea Strazzulli; Luisa Maurelli; Nicola Curci; Angela Casillo; Maria Michela Corsaro; Marco Moracci; Beatrice Cobucci-Ponzano
Journal:  Appl Environ Microbiol       Date:  2019-01-09       Impact factor: 4.792

2.  Transcript Regulation of the Recoded Archaeal α-l-Fucosidase In Vivo.

Authors:  Federica De Lise; Roberta Iacono; Andrea Strazzulli; Rosa Giglio; Nicola Curci; Luisa Maurelli; Rosario Avino; Antonio Carandente; Stefano Caliro; Alessandra Tortora; Fabio Lorenzini; Paola Di Donato; Marco Moracci; Beatrice Cobucci-Ponzano
Journal:  Molecules       Date:  2021-03-25       Impact factor: 4.411

  2 in total

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