Literature DB >> 11934750

OligoArray: genome-scale oligonucleotide design for microarrays.

Jean-Marie Rouillard1, Christopher J Herbert, Michael Zuker.   

Abstract

SUMMARY: OligoArray is a program that computes gene specific and secondary structure free oligonucleotides for genome-scale oligonucleotide microarray construction or other applications. AVAILABILITY: The program code is distributed under the GNU General Public License and is freely available for non-profit use via request from the authors.

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Year:  2002        PMID： 11934750     DOI： 10.1093/bioinformatics/18.3.486

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  53 in total

1.  A PCR primer bank for quantitative gene expression analysis.

Authors:  Xiaowei Wang; Brian Seed
Journal:  Nucleic Acids Res       Date:  2003-12-15       Impact factor: 16.971

2.  Mfold web server for nucleic acid folding and hybridization prediction.

Authors:  Michael Zuker
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Probe selection for high-density oligonucleotide arrays.

Authors:  Rui Mei; Earl Hubbell; Stefan Bekiranov; Mike Mittmann; Fred C Christians; Mei-Mei Shen; Gang Lu; Joy Fang; Wei-Min Liu; Tom Ryder; Paul Kaplan; David Kulp; Teresa A Webster
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-19       Impact factor: 11.205

4.  Genome-scale design of PCR primers and long oligomers for DNA microarrays.

Authors:  Stefan A Haas; Marc Hild; Anthony P H Wright; Torsten Hain; Driss Talibi; Martin Vingron
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

5.  Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400.

Authors:  V J Denef; J Park; T V Tsoi; J-M Rouillard; H Zhang; J A Wibbenmeyer; W Verstraete; E Gulari; S A Hashsham; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

6.  Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays.

Authors:  Paul M K Gordon; Christoph W Sensen
Journal:  Nucleic Acids Res       Date:  2004-09-29       Impact factor: 16.971

7.  Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis.

Authors:  Qiang He; Katherine H Huang; Zhili He; Eric J Alm; Matthew W Fields; Terry C Hazen; Adam P Arkin; Judy D Wall; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2006-06       Impact factor: 4.792

8.  Developmental and gene expression analyses of a cotton naked seed mutant.

Authors:  Jinsuk J Lee; Osama S S Hassan; Wenxilang Gao; Ning E Wei; Russell J Kohel; Xiao-Ya Chen; Paxton Payton; Sing-Hoi Sze; David M Stelly; Z Jeffrey Chen
Journal:  Planta       Date:  2005-10-28       Impact factor: 4.116

Review 9.  DNA microarrays--techniques and applications in microbial systems.

Authors:  T Majtán; G Bukovská; J Timko
Journal:  Folia Microbiol (Praha)       Date:  2004       Impact factor: 2.099

Review 10.  Microarray applications in microbial ecology research.

Authors:  T J Gentry; G S Wickham; C W Schadt; Z He; J Zhou
Journal:  Microb Ecol       Date:  2006-08-08       Impact factor: 4.552
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