Literature DB >> 11929996

Diversity and evolution of the green fluorescent protein family.

Y A Labas1, N G Gurskaya, Y G Yanushevich, A F Fradkov, K A Lukyanov, S A Lukyanov, M V Matz.   

Abstract

The family of proteins homologous to the green fluorescent protein (GFP) from Aequorea victoria exhibits striking diversity of features, including several different types of autocatalytically synthesized chromophores. Here we report 11 new members of the family, among which there are 3 red-emitters possessing unusual features, and discuss the similarity relationships within the family in structural, spectroscopic, and evolutionary terms. Phylogenetic analysis has shown that GFP-like proteins from representatives of subclass Zoantharia fall into at least four distinct clades, each clade containing proteins of more than one emission color. This topology suggests multiple recent events of color conversion. Combining this result with previous mutagenesis and structural data, we propose that (i) different chromophore structures are alternative products synthesized within a similar autocatalytic environment, and (ii) the phylogenetic pattern and color diversity in reef Anthozoa is a result of a balance between selection for GFP-like proteins of particular colors and mutation pressure driving the color conversions.

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Year:  2002        PMID: 11929996      PMCID: PMC123635          DOI: 10.1073/pnas.062552299

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

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Journal:  Comput Appl Biosci       Date:  1992-06

2.  Structural basis for dual excitation and photoisomerization of the Aequorea victoria green fluorescent protein.

Authors:  K Brejc; T K Sixma; P A Kitts; S R Kain; R Y Tsien; M Ormö; S J Remington
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-18       Impact factor: 11.205

3.  The structural basis for spectral variations in green fluorescent protein.

Authors:  G J Palm; A Zdanov; G A Gaitanaris; R Stauber; G N Pavlakis; A Wlodawer
Journal:  Nat Struct Biol       Date:  1997-05

4.  Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation.

Authors:  Z Yang; N Goldman; A Friday
Journal:  Mol Biol Evol       Date:  1994-03       Impact factor: 16.240

5.  Improved green fluorescence.

Authors:  R Heim; A B Cubitt; R Y Tsien
Journal:  Nature       Date:  1995-02-23       Impact factor: 49.962

6.  Wavelength mutations and posttranslational autoxidation of green fluorescent protein.

Authors:  R Heim; D C Prasher; R Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-20       Impact factor: 11.205

7.  PAML: a program package for phylogenetic analysis by maximum likelihood.

Authors:  Z Yang
Journal:  Comput Appl Biosci       Date:  1997-10

8.  Crystal structure of the Aequorea victoria green fluorescent protein.

Authors:  M Ormö; A B Cubitt; K Kallio; L A Gross; R Y Tsien; S J Remington
Journal:  Science       Date:  1996-09-06       Impact factor: 47.728

9.  Dating of the human-ape splitting by a molecular clock of mitochondrial DNA.

Authors:  M Hasegawa; H Kishino; T Yano
Journal:  J Mol Evol       Date:  1985       Impact factor: 2.395

10.  Color transitions in coral's fluorescent proteins by site-directed mutagenesis.

Authors:  N G Gurskaya; A P Savitsky; Y G Yanushevich; S A Lukyanov; K A Lukyanov
Journal:  BMC Biochem       Date:  2001-07-10       Impact factor: 4.059

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  76 in total

1.  Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures.

Authors:  David P Barondeau; Christopher D Putnam; Carey J Kassmann; John A Tainer; Elizabeth D Getzoff
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-01       Impact factor: 11.205

2.  DsRed as a potential FRET partner with CFP and GFP.

Authors:  Michael G Erickson; Daniel L Moon; David T Yue
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

3.  An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein.

Authors:  Ryoko Ando; Hiroshi Hama; Miki Yamamoto-Hino; Hideaki Mizuno; Atsushi Miyawaki
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

4.  Cyan-emitting and orange-emitting fluorescent proteins as a donor/acceptor pair for fluorescence resonance energy transfer.

Authors:  Satoshi Karasawa; Toshio Araki; Takeharu Nagai; Hideaki Mizuno; Atsushi Miyawaki
Journal:  Biochem J       Date:  2004-07-01       Impact factor: 3.857

5.  Room temperature spectrally resolved single-molecule spectroscopy reveals new spectral forms and photophysical versatility of aequorea green fluorescent protein variants.

Authors:  Christian Blum; Alfred J Meixner; Vinod Subramaniam
Journal:  Biophys J       Date:  2004-09-28       Impact factor: 4.033

Review 6.  Proteins on the move: insights gained from fluorescent protein technologies.

Authors:  Atsushi Miyawaki
Journal:  Nat Rev Mol Cell Biol       Date:  2011-09-23       Impact factor: 94.444

7.  Total internal reflection fluorescence (TIRF) microscopy of Chlamydomonas flagella.

Authors:  Benjamin D Engel; Karl-Ferdinand Lechtreck; Tsuyoshi Sakai; Mitsuo Ikebe; George B Witman; Wallace F Marshall
Journal:  Methods Cell Biol       Date:  2009-12-04       Impact factor: 1.441

8.  Selective advantage of resistant strains at trace levels of antibiotics: a simple and ultrasensitive color test for detection of antibiotics and genotoxic agents.

Authors:  Anne Liu; Amie Fong; Elinne Becket; Jessica Yuan; Cindy Tamae; Leah Medrano; Maria Maiz; Christine Wahba; Catherine Lee; Kim Lee; Katherine P Tran; Hanjing Yang; Robert M Hoffman; Anya Salih; Jeffrey H Miller
Journal:  Antimicrob Agents Chemother       Date:  2011-01-03       Impact factor: 5.191

9.  Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine.

Authors:  Vladimir Z Pletnev; Nadya V Pletneva; Konstantin A Lukyanov; Ekaterina A Souslova; Arkady F Fradkov; Dmitry M Chudakov; Tatyana Chepurnykh; Ilia V Yampolsky; Alexander Wlodawer; Zbigniew Dauter; Sergei Pletnev
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-08-17

Review 10.  The fluorescent protein palette: tools for cellular imaging.

Authors:  Richard N Day; Michael W Davidson
Journal:  Chem Soc Rev       Date:  2009-08-04       Impact factor: 54.564

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