Literature DB >> 11916872

Interaction of proteins in solution from small-angle scattering: a perturbative approach.

Francesco Spinozzi1, Domenico Gazzillo, Achille Giacometti, Paolo Mariani, Flavio Carsughi.   

Abstract

In this work an improved methodology for studying interactions of proteins in solution by small-angle scattering is presented. Unlike the most common approach, where the protein-protein correlation functions g(ij)(r) are approximated by their zero-density limit (i.e., the Boltzmann factor), we propose a more accurate representation of g(ij)(r) that takes into account terms up to the first order in the density expansion of the mean-force potential. This improvement is expected to be particularly effective in the case of strong protein-protein interactions at intermediate concentrations. The method is applied to analyze small-angle x-ray scattering data obtained as a function of the ionic strength (from 7 to 507 mM) from acidic solutions of beta-lactoglobulin at the fixed concentration of 10 gl(-1). The results are compared with those obtained using the zero-density approximation and show significant improvement, particularly in the more demanding case of low ionic strength.

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Year:  2002        PMID: 11916872      PMCID: PMC1302010          DOI: 10.1016/S0006-3495(02)75563-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  12 in total

Review 1.  Polarizable force fields.

Authors:  T A Halgren; W Damm
Journal:  Curr Opin Struct Biol       Date:  2001-04       Impact factor: 6.809

2.  Crystal structures of bovine beta-lactoglobulin in the orthorhombic space group C222(1). Structural differences between genetic variants A and B and features of the Tanford transition.

Authors:  K M Oliveira; V L Valente-Mesquita; M M Botelho; L Sawyer; S T Ferreira; I Polikarpov
Journal:  Eur J Biochem       Date:  2001-01

3.  Ligand-induced conformational changes in tissue transglutaminase: Monte Carlo analysis of small-angle scattering data.

Authors:  P Mariani; F Carsughi; F Spinozzi; S Romanzetti; G Meier; R Casadio; C M Bergamini
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

4.  Late stages of delta ' precipitation in an Al-Li alloy by small-angle neutron scattering.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1990-08-01

5.  Low-resolution structures of proteins in solution retrieved from X-ray scattering with a genetic algorithm.

Authors:  P Chacón; F Morán; J F Díaz; E Pantos; J M Andreu
Journal:  Biophys J       Date:  1998-06       Impact factor: 4.033

6.  Protein interactions in solution characterized by light and neutron scattering: comparison of lysozyme and chymotrypsinogen.

Authors:  O D Velev; E W Kaler; A M Lenhoff
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

7.  Integral-equation theory of polydisperse Yukawa systems.

Authors: 
Journal:  Phys Rev A       Date:  1992-12-15       Impact factor: 3.140

8.  Interactions of lysozyme in concentrated electrolyte solutions from dynamic light-scattering measurements.

Authors:  D E Kuehner; C Heyer; C Rämsch; U M Fornefeld; H W Blanch; J M Prausnitz
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

9.  Protein hydration in solution: experimental observation by x-ray and neutron scattering.

Authors:  D I Svergun; S Richard; M H Koch; Z Sayers; S Kuprin; G Zaccai
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

10.  Factors related to an effective referral and consultation process.

Authors:  J P Hansen; S E Brown; R J Sullivan; L H Muhlbaier
Journal:  J Fam Pract       Date:  1982-10       Impact factor: 0.493

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  9 in total

1.  Combining structure and dynamics: non-denaturing high-pressure effect on lysozyme in solution.

Authors:  Maria Grazia Ortore; Francesco Spinozzi; Paolo Mariani; Alessandro Paciaroni; Leandro R S Barbosa; Heinz Amenitsch; Milos Steinhart; Jacques Ollivier; Daniela Russo
Journal:  J R Soc Interface       Date:  2009-07-01       Impact factor: 4.118

2.  SANS/SAXS study of the BSA solvation properties in aqueous urea solutions via a global fit approach.

Authors:  Raffaele Sinibaldi; Maria Grazia Ortore; Francesco Spinozzi; Sérgio de Souza Funari; José Teixeira; Paolo Mariani
Journal:  Eur Biophys J       Date:  2008-03-26       Impact factor: 1.733

Review 3.  Proteins in binary solvents.

Authors:  Francesco Spinozzi; Paolo Mariani; Maria Grazia Ortore
Journal:  Biophys Rev       Date:  2016-03-18

4.  The importance of protein-protein interactions on the pH-induced conformational changes of bovine serum albumin: a small-angle X-ray scattering study.

Authors:  Leandro R S Barbosa; Maria Grazia Ortore; Francesco Spinozzi; Paolo Mariani; Sigrid Bernstorff; Rosangela Itri
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

5.  Protein self-association in solution: the bovine pancreatic trypsin inhibitor decamer.

Authors:  Michael Gottschalk; Kandadai Venu; Bertil Halle
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

6.  Guanosine quadruplexes in solution: a small-angle x-ray scattering analysis of temperature effects on self-assembling of deoxyguanosine monophosphate.

Authors:  P Mariani; F Spinozzi; F Federiconi; M G Ortore; H Amenitsch; L Spindler; I Drevensek-Olenik
Journal:  J Nucleic Acids       Date:  2010-06-21

7.  GENFIT: software for the analysis of small-angle X-ray and neutron scattering data of macro-molecules in solution.

Authors:  Francesco Spinozzi; Claudio Ferrero; Maria Grazia Ortore; Alejandro De Maria Antolinos; Paolo Mariani
Journal:  J Appl Crystallogr       Date:  2014-05-10       Impact factor: 3.304

8.  The dimer-monomer equilibrium of SARS-CoV-2 main protease is affected by small molecule inhibitors.

Authors:  Lucia Silvestrini; Norhan Belhaj; Lucia Comez; Yuri Gerelli; Antonino Lauria; Valeria Libera; Paolo Mariani; Paola Marzullo; Maria Grazia Ortore; Antonio Palumbo Piccionello; Caterina Petrillo; Lucrezia Savini; Alessandro Paciaroni; Francesco Spinozzi
Journal:  Sci Rep       Date:  2021-04-29       Impact factor: 4.379

9.  SAXS Reveals the Stabilization Effects of Modified Sugars on Model Proteins.

Authors:  Astra Piccinini; Eva C Lourenço; Osvaldo S Ascenso; Maria Rita Ventura; Heinz Amenitsch; Paolo Moretti; Paolo Mariani; Maria Grazia Ortore; Francesco Spinozzi
Journal:  Life (Basel)       Date:  2022-01-15
  9 in total

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