Literature DB >> 11908086

Accurate prediction of proton chemical shifts. II. Peptide analogues.

Bing Wang1, James F Hinton, Peter Pulay.   

Abstract

Proton chemical shifts of eight cyclic amide molecules were measured in DMSO and D2O solutions. The magnetic shieldings of the corresponding aliphatic, aromatic, and amide protons were calculated by Hartree-Fock and DFT, using the 6-311G**, 6-311++G**, and TZVP basis sets. For aliphatic protons, all of these methods reproduce the experimental values in DMSO solutions excellently after linear regression. The Hartree-Fock method tends to give slightly better agreement than DFT. The best performance is given by the HF/6-311G** method, with an rms deviation of 0.068 ppm. The deviations from experimental chemical shifts in D2O solutions are only slightly larger than those in DMSO solutions. This suggests that we can use the calculated gas phase proton chemical shifts directly to predict experimental data in various solvents, including water. For amide protons, which exchange with water and form hydrogen bonds with DMSO, only modest agreement is obtained, as expected. The present studies confirm that the GIAO approach can reach high accuracy for the relative chemical shifts of aliphatic and aromatic protons at a low cost. Such calculations may provide constraints for the conformational analysis of proteins and other macromolecules.

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Year:  2002        PMID: 11908086     DOI: 10.1002/jcc.10044

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  3 in total

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Authors:  Hua Deng
Journal:  Adv Protein Chem Struct Biol       Date:  2013       Impact factor: 3.507

2.  Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic ¹⁵N chemical shielding anisotropy tensors.

Authors:  Jiří Emmer; Andrea Vavrinská; Vladimír Sychrovský; Ladislav Benda; Zdeněk Kříž; Jaroslav Koča; Rolf Boelens; Vladimír Sklenář; Lukáš Trantírek
Journal:  J Biomol NMR       Date:  2012-12-01       Impact factor: 2.835

3.  An automated framework for NMR chemical shift calculations of small organic molecules.

Authors:  Yasemin Yesiltepe; Jamie R Nuñez; Sean M Colby; Dennis G Thomas; Mark I Borkum; Patrick N Reardon; Nancy M Washton; Thomas O Metz; Justin G Teeguarden; Niranjan Govind; Ryan S Renslow
Journal:  J Cheminform       Date:  2018-10-26       Impact factor: 5.514

  3 in total

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