Literature DB >> 11897028

Comparative genomics of Arabidopsis and maize: prospects and limitations.

Volker Brendel1, Stefan Kurtz, Virginia Walbot.   

Abstract

The completed Arabidopsis genome seems to be of limited value as a model for maize genomics. In addition to the expansion of repetitive sequences in maize and the lack of genomic micro-colinearity, maize-specific or highly-diverged proteins contribute to a predicted maize proteome of about 50,000 proteins, twice the size of that of Arabidopsis.

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Year:  2002        PMID： 11897028      PMCID： PMC139024          DOI： 10.1186/gb-2002-3-3-reviews1005

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


  27 in total

1.  Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring.

Authors:  J Usuka; V Brendel
Journal:  J Mol Biol       Date:  2000-04-14       Impact factor: 5.469

2.  Evolutionary history of the grasses.

Authors:  E A Kellogg
Journal:  Plant Physiol       Date:  2001-03       Impact factor: 8.340

3.  DNA sequence evidence for the segmental allotetraploid origin of maize.

Authors:  B S Gaut; J F Doebley
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-24       Impact factor: 11.205

Review 4.  Comparative sequence analysis of plant nuclear genomes:m microcolinearity and its many exceptions.

Authors:  J L Bennetzen
Journal:  Plant Cell       Date:  2000-07       Impact factor: 11.277

5.  The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genome.

Authors:  H Fu; W Park; X Yan; Z Zheng; B Shen; H K Dooner
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

6.  Molecular characterization of meiotic recombination across the 140-kb multigenic a1-sh2 interval of maize.

Authors:  Hong Yao; Qing Zhou; Jin Li; Heather Smith; Marna Yandeau; Basil J Nikolau; Patrick S Schnable
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

7.  Grass genomes.

Authors:  J L Bennetzen; P SanMiguel; M Chen; A Tikhonov; M Francki; Z Avramova
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

8.  The complete sequence of 340 kb of DNA around the rice Adh1-adh2 region reveals interrupted colinearity with maize chromosome 4.

Authors:  R Tarchini; P Biddle; R Wineland; S Tingey; A Rafalski
Journal:  Plant Cell       Date:  2000-03       Impact factor: 11.277

9.  Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis.

Authors:  D Grant; P Cregan; R C Shoemaker
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

Review 10.  Of genes and genomes and the origin of maize.

Authors:  S White; J Doebley
Journal:  Trends Genet       Date:  1998-08       Impact factor: 11.639
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  14 in total

Review 1.  Comparative genomics: methods and applications.

Authors:  Bernhard Haubold; Thomas Wiehe
Journal:  Naturwissenschaften       Date:  2004-06-25

2.  Comparative analysis of expressed sequence tags of conifers and angiosperms reveals sequences specifically conserved in conifers.

Authors:  Tokuko Ujino-Ihara; Hiroyuki Kanamori; Hiroko Yamane; Yuriko Taguchi; Nobukazu Namiki; Yuzuru Mukai; Kensuke Yoshimura; Yoshihiko Tsumura
Journal:  Plant Mol Biol       Date:  2005-12       Impact factor: 4.076

3.  MAIZEWALL. Database and developmental gene expression profiling of cell wall biosynthesis and assembly in maize.

Authors:  Sabine Guillaumie; Hélène San-Clemente; Caroline Deswarte; Yves Martinez; Catherine Lapierre; Alain Murigneux; Yves Barrière; Magalie Pichon; Deborah Goffner
Journal:  Plant Physiol       Date:  2006-11-10       Impact factor: 8.340

Review 4.  Functional Diversification of Chromatin on Rapid Evolutionary Timescales.

Authors:  Cara L Brand; Mia T Levine
Journal:  Annu Rev Genet       Date:  2021-11-23       Impact factor: 13.826

5.  Constructing Physical and Genomic Maps for Puccinia striiformis f. sp. tritici, the Wheat Stripe Rust Pathogen, by Comparing Its EST Sequences to the Genomic Sequence of P. graminis f. sp. tritici, the Wheat Stem Rust Pathogen.

Authors:  Jinbiao Ma; Xianming Chen; Meinan Wang; Zhensheng Kang
Journal:  Comp Funct Genomics       Date:  2010-02-11

6.  ZmDB, an integrated database for maize genome research.

Authors:  Qunfeng Dong; Laura Roy; Michael Freeling; Virginia Walbot; Volker Brendel
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

7.  Genome-wide identification and characterisation of F-box family in maize.

Authors:  Fengjuan Jia; Bingjiang Wu; Hui Li; Jinguang Huang; Chengchao Zheng
Journal:  Mol Genet Genomics       Date:  2013-08-09       Impact factor: 3.291

8.  A plastome primer set for comprehensive quantitative real time RT-PCR analysis of Zea mays: a starter primer set for other Poaceae species.

Authors:  Richard M Sharpe; Sade N Dunn; A Bruce Cahoon
Journal:  Plant Methods       Date:  2008-06-02       Impact factor: 4.993

9.  Evaluation of monocot and eudicot divergence using the sugarcane transcriptome.

Authors:  Michel Vincentz; Frank A A Cara; Vagner K Okura; Felipe R da Silva; Guilherme L Pedrosa; Adriana S Hemerly; Adriana N Capella; Mozart Marins; Paulo C Ferreira; Suzelei C França; Laurent Grivet; Andre L Vettore; Edson L Kemper; Willian L Burnquist; Maria L P Targon; Walter J Siqueira; Eiko E Kuramae; Celso L Marino; Luis E A Camargo; Helaine Carrer; Luis L Coutinho; Luiz R Furlan; Manoel V F Lemos; Luiz R Nunes; Suely L Gomes; Roberto V Santelli; Maria H Goldman; Maurício Bacci; Eder A Giglioti; Otávio H Thiemann; Flávio H Silva; Marie-Anne Van Sluys; Francisco G Nobrega; Paulo Arruda; Carlos F M Menck
Journal:  Plant Physiol       Date:  2004-03       Impact factor: 8.340

10.  Comparative mapping reveals similar linkage of functional genes to QTL of yield-related traits between Brassica napus and Oryza sativa.

Authors:  Fupeng Li; Chaozhi Ma; Qingfang Chen; Touming Liu; Jinxiong Shen; Jinxing Tu; Yongzhong Xing; Tingdong Fu
Journal:  J Genet       Date:  2012-08       Impact factor: 1.166
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